Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014589.1-P | Field mustard | nucleus | 92.93 | 98.97 |
| CDY67927 | Canola | cytosol | 98.71 | 98.71 |
| CDY57244 | Canola | cytosol | 95.5 | 96.43 |
| CDY56244 | Canola | cytosol | 89.39 | 96.19 |
| CDX71977 | Canola | cytosol | 95.5 | 95.81 |
| AT3G58040.3 | Thale cress | cytosol | 94.86 | 95.78 |
| CDY06056 | Canola | cytosol | 80.39 | 95.42 |
| CDY06889 | Canola | cytosol | 84.57 | 88.55 |
| CDY14808 | Canola | cytosol | 84.89 | 87.42 |
| CDY64066 | Canola | cytosol | 29.58 | 85.19 |
| CDY22549 | Canola | nucleus | 83.92 | 84.47 |
| CDY35390 | Canola | nucleus | 82.64 | 83.71 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 81.03 | 80.0 |
| PGSC0003DMT400060947 | Potato | cytosol | 60.13 | 76.33 |
| PGSC0003DMT400060943 | Potato | cytosol | 60.13 | 76.33 |
| KRH67087 | Soybean | nucleus | 81.35 | 74.85 |
| KRG95412 | Soybean | nucleus | 81.03 | 73.68 |
| CDY67278 | Canola | cytosol | 18.01 | 69.14 |
| CDX92848 | Canola | nucleus | 67.52 | 68.85 |
| CDY67899 | Canola | cytosol, plastid | 36.33 | 68.07 |
| CDX89221 | Canola | nucleus | 69.77 | 67.39 |
| CDY19018 | Canola | nucleus | 69.77 | 67.39 |
| CDY14268 | Canola | nucleus | 69.13 | 67.19 |
| Solyc10g080570.1.1 | Tomato | cytosol | 65.27 | 67.0 |
| CDX97399 | Canola | nucleus | 68.49 | 66.36 |
| CDX67865 | Canola | nucleus | 68.17 | 65.63 |
| CDY25077 | Canola | nucleus | 68.17 | 65.63 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 45.98 | 64.71 |
| CDX89132 | Canola | cytosol | 67.2 | 64.11 |
| CDY43950 | Canola | nucleus | 66.88 | 64.0 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 56.27 | 63.41 |
| CDY38819 | Canola | nucleus | 36.66 | 58.76 |
| CDX75727 | Canola | cytosol | 38.26 | 55.61 |
| CDX82523 | Canola | cytosol | 37.3 | 54.21 |
| CDY11709 | Canola | nucleus | 15.43 | 29.09 |
| CDY10787 | Canola | plastid | 22.51 | 24.22 |
| CDX99687 | Canola | nucleus | 21.22 | 23.32 |
| CDY52473 | Canola | nucleus | 21.22 | 23.24 |
| CDY01699 | Canola | nucleus, plastid | 20.9 | 23.05 |
| CDY01695 | Canola | nucleus | 21.22 | 21.36 |
| CDY27008 | Canola | nucleus | 22.19 | 20.97 |
| CDY25763 | Canola | nucleus | 18.33 | 20.96 |
| CDY12498 | Canola | nucleus | 18.33 | 20.96 |
| CDY47873 | Canola | nucleus | 21.54 | 20.68 |
| CDY36209 | Canola | plastid | 13.83 | 20.38 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.01 | 18.86 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.61 | 18.44 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.36 | 18.37 |
| CDX96138 | Canola | nucleus | 19.29 | 17.65 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 19.29 | 17.19 |
| CDY36211 | Canola | nucleus | 19.94 | 17.17 |
| CDY70665 | Canola | nucleus | 16.4 | 15.74 |
| CDY01757 | Canola | cytosol | 2.25 | 13.21 |
| CDY01758 | Canola | cytosol | 12.86 | 9.15 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078DP41 | EnsemblPlants:CDX88968 | ProteinID:CDX88968 | ProteinID:CDX88968.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00149077001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EDF3E7 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
BnaA04g02180D
Coordinates
chrLK031857:+:281288..284280
Molecular Weight (calculated)
35141.0 Da
IEP (calculated)
8.029
GRAVY (calculated)
-0.474
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGGSALKE VLESNSTGMD YEVKTTKVEV SNSNNSKSTK SGGAGTGKYG MHSNNGVYEL LECPVCTNLM YPPIHQCPNG HTLCSNCKAR VQNTCPTCRY
101: ELGNIRCLAL EKVAESLEVP CRYQSLGCHD IFPYYSKLKH EQHCRFRPYA CPYAGSECLV TGDISTLVVH LKDDHKVDMH DGCTFNHRYV KSNPHEVENA
201: TWMLTVFNCF GRQFCLHFEA FQLGMAPVYM AFLRFMGDEN EAKKFSYSLE VGAHGRKLTW QGIPRSIRDS HRKVRDSQDG LIIPRNLALY FSGGDRQELK
301: LRVTGRIWKE E
101: ELGNIRCLAL EKVAESLEVP CRYQSLGCHD IFPYYSKLKH EQHCRFRPYA CPYAGSECLV TGDISTLVVH LKDDHKVDMH DGCTFNHRYV KSNPHEVENA
201: TWMLTVFNCF GRQFCLHFEA FQLGMAPVYM AFLRFMGDEN EAKKFSYSLE VGAHGRKLTW QGIPRSIRDS HRKVRDSQDG LIIPRNLALY FSGGDRQELK
301: LRVTGRIWKE E
001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE
Arabidopsis Description
SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.