Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008328.1-P | Field mustard | cytosol | 98.15 | 98.15 |
| CDY67899 | Canola | cytosol, plastid | 87.04 | 56.63 |
| CDY38819 | Canola | nucleus | 87.04 | 48.45 |
| CDY06056 | Canola | cytosol | 87.04 | 35.88 |
| CDY35390 | Canola | nucleus | 97.22 | 34.2 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 87.04 | 34.06 |
| CDY22549 | Canola | nucleus | 97.22 | 33.98 |
| CDY06889 | Canola | cytosol | 92.59 | 33.67 |
| CDY14808 | Canola | cytosol | 92.59 | 33.11 |
| CDY56244 | Canola | cytosol | 86.11 | 32.18 |
| CDY57244 | Canola | cytosol | 86.11 | 30.19 |
| CDX71977 | Canola | cytosol | 85.19 | 29.68 |
| CDX88968 | Canola | cytosol | 85.19 | 29.58 |
| CDY67927 | Canola | cytosol | 84.26 | 29.26 |
| PGSC0003DMT400060943 | Potato | cytosol | 65.74 | 28.98 |
| PGSC0003DMT400060947 | Potato | cytosol | 65.74 | 28.98 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 58.33 | 28.51 |
| CDX82523 | Canola | cytosol | 55.56 | 28.04 |
| CDX75727 | Canola | cytosol | 55.56 | 28.04 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 78.7 | 26.98 |
| KRH67087 | Soybean | nucleus | 78.7 | 25.15 |
| KRG95412 | Soybean | nucleus | 78.7 | 24.85 |
| CDX92848 | Canola | nucleus | 69.44 | 24.59 |
| CDY14268 | Canola | nucleus | 70.37 | 23.75 |
| CDX89221 | Canola | nucleus | 70.37 | 23.6 |
| CDY19018 | Canola | nucleus | 70.37 | 23.6 |
| CDX67865 | Canola | nucleus | 69.44 | 23.22 |
| CDY25077 | Canola | nucleus | 69.44 | 23.22 |
| CDX97399 | Canola | nucleus | 68.52 | 23.05 |
| Solyc10g080570.1.1 | Tomato | cytosol | 63.89 | 22.77 |
| CDY43950 | Canola | nucleus | 68.52 | 22.77 |
| CDX89132 | Canola | cytosol | 68.52 | 22.7 |
| CDY01757 | Canola | cytosol | 5.56 | 11.32 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.26 | 5.59 |
| CDY10787 | Canola | plastid | 12.96 | 4.84 |
| CDY52473 | Canola | nucleus | 12.04 | 4.58 |
| CDY01699 | Canola | nucleus, plastid | 11.11 | 4.26 |
| CDX99687 | Canola | nucleus | 11.11 | 4.24 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 10.19 | 3.74 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 12.04 | 3.72 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 10.19 | 3.7 |
| CDY12498 | Canola | nucleus | 9.26 | 3.68 |
| CDY25763 | Canola | nucleus | 9.26 | 3.68 |
| CDY27008 | Canola | nucleus | 11.11 | 3.65 |
| CDY01695 | Canola | nucleus | 10.19 | 3.56 |
| CDY47873 | Canola | nucleus | 10.19 | 3.4 |
| CDY70665 | Canola | nucleus | 10.19 | 3.4 |
| CDX96138 | Canola | nucleus | 10.19 | 3.24 |
| CDY36211 | Canola | nucleus | 10.19 | 3.05 |
| CDY67278 | Canola | cytosol | 1.85 | 2.47 |
| CDY11709 | Canola | nucleus | 2.78 | 1.82 |
| CDY36209 | Canola | plastid | 2.78 | 1.42 |
| CDY01758 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078JCI2 | UniProt:A0A078JCI2 | EnsemblPlants:CDY64066 | ProteinID:CDY64066 | ProteinID:CDY64066.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00040852001 | InterPro:IPR008974 |
| PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EE9AA9 | : | : | : | : |
Description
BnaA02g36080DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078JCI2]
Coordinates
chrLK034395:+:30085..30411
Molecular Weight (calculated)
12631.2 Da
IEP (calculated)
10.261
GRAVY (calculated)
-0.628
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKVEATNKQ FCLHFEAFQL GTAPVYMAFL RFMGDENEAK KFSYSLEVGA HSRKLTWQGI PRSIRDGHRK FRDSQDGLII PRNMALFFSG SDKEERKLRV
101: TGRIWREE
101: TGRIWREE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.