Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 86.42 | 25.36 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 55.56 | 20.36 |
| CDY06889 | Canola | cytosol | 70.37 | 19.19 |
| CDY14808 | Canola | cytosol | 70.37 | 18.87 |
| CDY22549 | Canola | nucleus | 71.6 | 18.77 |
| CDY35390 | Canola | nucleus | 70.37 | 18.57 |
| CDY57244 | Canola | cytosol | 69.14 | 18.18 |
| CDX71977 | Canola | cytosol | 69.14 | 18.06 |
| CDY67927 | Canola | cytosol | 69.14 | 18.01 |
| CDX88968 | Canola | cytosol | 69.14 | 18.01 |
| CDY06056 | Canola | cytosol | 51.85 | 16.03 |
| CDX67865 | Canola | nucleus | 62.96 | 15.79 |
| CDY25077 | Canola | nucleus | 62.96 | 15.79 |
| CDY43950 | Canola | nucleus | 62.96 | 15.69 |
| CDX89132 | Canola | cytosol | 61.73 | 15.34 |
| CDX92848 | Canola | nucleus | 56.79 | 15.08 |
| CDY14268 | Canola | nucleus | 59.26 | 15.0 |
| CDX97399 | Canola | nucleus | 59.26 | 14.95 |
| CDY19018 | Canola | nucleus | 58.02 | 14.6 |
| CDX89221 | Canola | nucleus | 58.02 | 14.6 |
| CDY56244 | Canola | cytosol | 46.91 | 13.15 |
| CDY11709 | Canola | nucleus | 18.52 | 9.09 |
| CDY25763 | Canola | nucleus | 24.69 | 7.35 |
| CDY12498 | Canola | nucleus | 23.46 | 6.99 |
| CDY36209 | Canola | plastid | 16.05 | 6.16 |
| CDY10787 | Canola | plastid | 20.99 | 5.88 |
| CDY47873 | Canola | nucleus | 23.46 | 5.86 |
| CDY27008 | Canola | nucleus | 23.46 | 5.78 |
| CDY01699 | Canola | nucleus, plastid | 19.75 | 5.67 |
| CDX96138 | Canola | nucleus | 23.46 | 5.59 |
| CDY67899 | Canola | cytosol, plastid | 11.11 | 5.42 |
| CDX99687 | Canola | nucleus | 18.52 | 5.3 |
| CDY52473 | Canola | nucleus | 18.52 | 5.28 |
| CDY36211 | Canola | nucleus | 23.46 | 5.26 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 20.99 | 4.87 |
| CDY01695 | Canola | nucleus | 18.52 | 4.85 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.28 | 4.76 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.28 | 4.71 |
| CDY38819 | Canola | nucleus | 11.11 | 4.64 |
| CDY70665 | Canola | nucleus | 18.52 | 4.63 |
| CDY01758 | Canola | cytosol | 18.52 | 3.43 |
| CDX82523 | Canola | cytosol | 7.41 | 2.8 |
| CDX75727 | Canola | cytosol | 7.41 | 2.8 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 6.17 | 2.79 |
| Solyc06g017910.1.1 | Tomato | cytosol | 2.47 | 2.3 |
| CDY64066 | Canola | cytosol | 2.47 | 1.85 |
| CDY01757 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:35.1 | GO:A0A078JIA7 | UniProt:A0A078JIA7 |
| EnsemblPlants:CDY67278 | ProteinID:CDY67278 | ProteinID:CDY67278.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00060568001 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 | InterPro:SINA-like |
| UniPathway:UPA00143 | UniParc:UPI0004EF3EB8 | : | : | : | : |
Description
BnaUnng02090DBnaUnng02090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIA7]
Coordinates
chrLK035936:-:3499..3809
Molecular Weight (calculated)
9493.3 Da
IEP (calculated)
7.572
GRAVY (calculated)
-0.543
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MSQWPHVMFK LQTTSAEHVH PTCRYELGNI RCLALEKVAE SLEVSCRYQS LGCHDIFPYY SKHLKDDHKV DMHSGCTFNH R
001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVKLSFDMF SSFYQRFLI
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVKLSFDMF SSFYQRFLI
Arabidopsis Description
SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.