CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64066	Canola	cytosol	33.98	97.22
CDY35390	Canola	nucleus	94.82	95.44
CDY06889	Canola	cytosol	85.76	89.23
CDY14808	Canola	cytosol	85.76	87.75
CDY57244	Canola	cytosol	86.41	86.69
CDY56244	Canola	cytosol	80.91	86.51
CDX71977	Canola	cytosol	85.76	85.48
CDY06056	Canola	cytosol	72.17	85.11
CDY67927	Canola	cytosol	84.47	83.92
CDX88968	Canola	cytosol	84.47	83.92
VIT_08s0007g06740.t01	Wine grape	cytosol	80.26	78.73
CDY67899	Canola	cytosol, plastid	39.81	74.1
PGSC0003DMT400060947	Potato	cytosol	58.58	73.88
PGSC0003DMT400060943	Potato	cytosol	58.58	73.88
CDY67278	Canola	cytosol	18.77	71.6
KRH67087	Soybean	nucleus	76.38	69.82
KRG95412	Soybean	nucleus	76.38	69.01
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	60.84	68.12
CDY14650	Canola	cytosol, nucleus, plastid	48.54	67.87
Solyc10g080570.1.1	Tomato	cytosol	63.75	65.02
CDX92848	Canola	nucleus	63.75	64.59
CDX67865	Canola	nucleus	66.67	63.78
CDY25077	Canola	nucleus	66.67	63.78
CDY14268	Canola	nucleus	65.05	62.81
CDX89221	Canola	nucleus	65.37	62.73
CDY19018	Canola	nucleus	65.37	62.73
CDY43950	Canola	nucleus	65.7	62.46
CDY38819	Canola	nucleus	39.16	62.37
CDX97399	Canola	nucleus	64.72	62.31
CDX89132	Canola	cytosol	65.7	62.27
CDX75727	Canola	cytosol	37.86	54.67
CDX82523	Canola	cytosol	37.54	54.21
CDY11709	Canola	nucleus	14.89	27.88
CDY10787	Canola	plastid	21.04	22.49
CDX99687	Canola	nucleus	20.06	21.91
CDY52473	Canola	nucleus	20.06	21.83
CDY25763	Canola	nucleus	19.09	21.69
CDY01699	Canola	nucleus, plastid	19.42	21.28
CDY12498	Canola	nucleus	18.45	20.96
CDY36209	Canola	plastid	14.24	20.85
CDY27008	Canola	nucleus	21.04	19.76
CDY47873	Canola	nucleus	20.71	19.75
CDY01695	Canola	nucleus	19.42	19.42
CDX95911	Canola	cytosol, nucleus, plastid	17.48	18.37
CDY01756	Canola	cytosol, nucleus, plastid	17.48	18.18
CDX96138	Canola	nucleus	19.42	17.65
CDX96140	Canola	cytosol, nucleus, plastid	19.74	17.48
CDY36211	Canola	nucleus	20.06	17.17
CDY70665	Canola	nucleus	17.15	16.36
CDX83363	Canola	cytosol, nucleus, plasma membrane	8.74	15.08
CDY01757	Canola	cytosol	2.27	13.21
CDY01758	Canola	cytosol	12.62	8.92

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078GB37	UniProt:A0A078GB37	EnsemblPlants:CDY22549	ProteinID:CDY22549	ProteinID:CDY22549.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00019146001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EF11DF	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

BnaC03g23590DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078GB37]

Coordinates

chrLK032132:-:558933..561214

Molecular Weight (calculated)

35047.7 Da

IEP (calculated)

7.754

GRAVY (calculated)

-0.508

Length

309 amino acids

Sequence
(BLAST)

001: MAPGGITYKE ALESYSTGLD YEVKMSKFEA TNKPAKPGSG SVGKYGIRSS NGNGVHELLE CPVCTNLMYP PINQCPNGHT LCSSCKQQVQ NTCPTCRYEL
101: GNIRCLALEK VAESLEVSCR YQSLGCHDIF PYYSKVRHEQ HCRFRSYDCP YAGSECSVTG DIPTLVEHLK DDHKVDMHSG CTFNHRYVKS NPQEVENATW
201: MLTVFNCFGR QFCLHFEAFQ LGTAPVYMAF LRFMGDENEA KKFSYSLEVG AHSRKLTWQG IPRSIRDGHR KVRDSQDGLI IPRNMALFFS GSDKEELKLR
301: VTGRIWREE

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.