Factsheet for PGSC0003DMT400060947

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060943	Potato	cytosol	100.0	100.0
Solyc10g080570.1.1	Tomato	cytosol	92.65	74.92
Bra008328.1-P	Field mustard	cytosol	29.39	66.67
CDY64066	Canola	cytosol	28.98	65.74
AT3G58040.3	Thale cress	cytosol	77.55	61.69
CDY57244	Canola	cytosol	76.73	61.04
AT2G41980.1	Thale cress	nucleus	75.92	60.98
CDY06889	Canola	cytosol	73.88	60.94
CDY56244	Canola	cytosol	71.84	60.9
CDX71977	Canola	cytosol	76.73	60.65
CDX88968	Canola	cytosol	76.33	60.13
CDY67927	Canola	cytosol	76.33	60.13
CDY14808	Canola	cytosol	73.47	59.6
VIT_08s0007g06740.t01	Wine grape	cytosol	75.92	59.05
Bra000249.1-P	Field mustard	nucleus	73.88	58.96
CDY35390	Canola	nucleus	73.88	58.96
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	62.45	58.85
Bra016898.1-P	Field mustard	cytosol	73.06	58.69
CDY22549	Canola	nucleus	73.88	58.58
Bra014589.1-P	Field mustard	nucleus	69.8	58.56
CDY06056	Canola	cytosol	62.45	58.4
PGSC0003DMT400054414	Potato	cytosol	71.43	57.38
PGSC0003DMT400081996	Potato	cytosol	71.43	56.82
PGSC0003DMT400010948	Potato	cytosol	70.61	55.81
PGSC0003DMT400023575	Potato	cytosol	70.61	55.1
PGSC0003DMT400050427	Potato	cytosol	70.2	54.6
CDY67899	Canola	cytosol, plastid	36.73	54.22
KRH67087	Soybean	nucleus	73.06	52.96
PGSC0003DMT400048586	Potato	mitochondrion	68.98	52.65
KRG95412	Soybean	nucleus	73.06	52.34
PGSC0003DMT400018049	Potato	nucleus	69.39	51.05
PGSC0003DMT400000649	Potato	cytosol	68.16	49.7
Bra007376.1-P	Field mustard	cytosol	55.92	49.64
CDY14650	Canola	cytosol, nucleus, plastid	42.45	47.06
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	52.65	46.74
CDY38819	Canola	nucleus	36.33	45.88
PGSC0003DMT400043047	Potato	cytosol	16.33	21.74
PGSC0003DMT400043050	Potato	nucleus	22.86	14.7

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	UniProt:M1C6R4	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG401023705	PGSC:PGSC0003DMG401023705	EnsemblPlants:PGSC0003DMT400060947
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0002964316	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401023705]

Coordinates

chr10:-:57415675..57417687

Molecular Weight (calculated)

28266.3 Da

IEP (calculated)

8.286

GRAVY (calculated)

-0.321

Length

245 amino acids

Sequence
(BLAST)

001: MYPPFYQCPN GHTLCTNCKI EAQNCCPTCQ VELGNIRCLA LEKVAESLEL PCRYQNLGCH KILPYHRKLK HERRCKFRPY HCPYAGSECS ITGDIPTLML
101: HLKEDHKVDM HTGCTFNHRY VKSNAQQVDN AIWMLTVFDC FGRQFVLHFE AFSLGMTPVY IAFLRFMGED NEAKMFNYSL EVGGFGRKLT WQGVPRSIRD
201: SHRKIRDCQD GLIIPRTLAF FFSGGNGEEL TLKVIGRIWK EHSTS

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.