Factsheet for PGSC0003DMT400050427

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051980.2.1	Tomato	cytosol	98.1	98.1
PGSC0003DMT400023575	Potato	cytosol	90.79	91.08
VIT_02s0025g01660.t01	Wine grape	cytosol	86.98	86.71
PGSC0003DMT400048586	Potato	mitochondrion	86.03	84.42
GSMUA_Achr5P06970_001	Banana	cytosol	83.49	81.17
PGSC0003DMT400018049	Potato	nucleus	85.4	80.78
CDX92848	Canola	nucleus	78.1	80.66
PGSC0003DMT400000649	Potato	cytosol	85.4	80.06
AT4G27880.1	Thale cress	nucleus	81.27	78.29
CDY14268	Canola	nucleus	79.37	78.12
Bra010392.1-P	Field mustard	nucleus	79.37	78.12
CDY19018	Canola	nucleus	79.68	77.95
Bra026301.1-P	Field mustard	nucleus	79.68	77.95
CDX89221	Canola	nucleus	79.68	77.95
CDX97399	Canola	nucleus	79.05	77.57
PGSC0003DMT400054414	Potato	cytosol	70.16	72.46
PGSC0003DMT400060943	Potato	cytosol	54.6	70.2
PGSC0003DMT400060947	Potato	cytosol	54.6	70.2
PGSC0003DMT400081996	Potato	cytosol	63.81	65.26
PGSC0003DMT400010948	Potato	cytosol	64.13	65.16
VIT_15s0046g00400.t01	Wine grape	cytosol	49.21	57.41
VIT_00s0426g00040.t01	Wine grape	mitochondrion	42.22	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	45.71	53.53
VIT_15s0046g00410.t01	Wine grape	cytosol	30.16	52.49
VIT_00s0726g00020.t01	Wine grape	extracellular	17.14	46.96
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.56	46.23
VIT_15s0046g00380.t01	Wine grape	cytosol	36.51	46.18
PGSC0003DMT400043047	Potato	cytosol	12.7	21.74
PGSC0003DMT400043050	Potato	nucleus	21.9	18.11

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	UniProt:M1BQ97	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400019600	PGSC:PGSC0003DMG400019600
EnsemblPlants:PGSC0003DMT400050427	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002969B4A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

SINA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019600]

Coordinates

chr6:-:38297699..38304313

Molecular Weight (calculated)

35824.8 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.371

Length

315 amino acids

Sequence
(BLAST)

001: MEMDSIECVS LMDGVEDEEI QSSVASHQYP LGKPNNILHA GNVPTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKTR VHNRCPTCRQ ELGDIRCLAL
101: EKVAESLELP CKYFSLGCPE IFPYYSKLKH ETLCNFRPYS CPYAGSECSV TGDIPFLVTH LRDDHKVDMH TGCTFNHRYV KSNPREVENA TWMLTVFHCF
201: GQYFCLHFEA FQLGVAPVYM AFLRFMGDET DARNYSYSLE VGGNGRKLIW EGTPRSIRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK LRVTGRIWKE
301: QQNPDGGVCI PNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.