Factsheet for PGSC0003DMT400081996

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006190.2.1	Tomato	cytosol	99.03	99.03
PGSC0003DMT400010948	Potato	cytosol	90.26	89.68
VIT_06s0004g01130.t01	Wine grape	cytosol	72.73	72.73
PGSC0003DMT400060947	Potato	cytosol	56.82	71.43
PGSC0003DMT400060943	Potato	cytosol	56.82	71.43
PGSC0003DMT400054414	Potato	cytosol	68.18	68.85
PGSC0003DMT400023575	Potato	cytosol	65.26	64.01
PGSC0003DMT400050427	Potato	cytosol	65.26	63.81
PGSC0003DMT400048586	Potato	mitochondrion	65.26	62.62
PGSC0003DMT400018049	Potato	nucleus	64.94	60.06
PGSC0003DMT400000649	Potato	cytosol	65.26	59.82
CDX75727	Canola	cytosol	39.61	57.01
Bra001519.1-P	Field mustard	nucleus	38.96	56.07
CDX82523	Canola	cytosol	38.96	56.07
AT3G13672.2	Thale cress	nucleus	39.61	50.21
PGSC0003DMT400043047	Potato	cytosol	12.99	21.74
PGSC0003DMT400043050	Potato	nucleus	21.75	17.59

Protein Annotations

EntrezGene:102584192	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M1D5F6	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG401032194
PGSC:PGSC0003DMG401032194	EnsemblPlants:PGSC0003DMT400081996	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000296689A	RefSeq:XP_006354176.1
RefSeq:XP_006354177.1	RefSeq:XP_006354179.1	RefSeq:XP_015167161.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

Ubiquitin ligase SINAT2 [Source:PGSC_GENE;Acc:PGSC0003DMG401032194]

Coordinates

chr1:-:1676231..1681313

Molecular Weight (calculated)

34730.6 Da

IEP (calculated)

7.913

GRAVY (calculated)

-0.355

Length

308 amino acids

Sequence
(BLAST)

001: MAPGGSNYQD IGDSRSAYAD YGIAPESAEF KNSPFRKAAA VIGGKNGAGS NSAVHELLEC PVCMNPMYPP IHQCPNGHTL CVKCKSKVHV CPICRHELGN
101: IRCLALEKIA ESLELPCRYQ IYGCQDIFTY HTRLRHEQNC RFRPYNCPYA GSECAVTGDI QHLVAHLKDD HKVDMHDGCT FNHRYVKSNP QEVENATWML
201: TVFNCFGHQF CLHFEAFNLG LAPVYMAFLR FMGDDDDAKR FSYSLEVGGF GRKLTWQGVP RSIRDSHKTV RDSLDGLIIQ RSMALFFSGG DRKELKLKVA
301: GRIWREPL

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.