Factsheet for PGSC0003DMT400048586

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009420.2.1	Tomato	nucleus	95.64	97.15
VIT_02s0025g01660.t01	Wine grape	cytosol	85.05	86.39
PGSC0003DMT400023575	Potato	cytosol	84.42	86.31
PGSC0003DMT400050427	Potato	cytosol	84.42	86.03
PGSC0003DMT400000649	Potato	cytosol	89.72	85.71
PGSC0003DMT400018049	Potato	nucleus	86.6	83.48
KRG97189	Soybean	nucleus	79.75	81.53
GSMUA_Achr5P06970_001	Banana	cytosol	81.93	81.17
KRH68916	Soybean	nucleus	77.57	75.91
PGSC0003DMT400054414	Potato	cytosol	68.85	72.46
PGSC0003DMT400060943	Potato	cytosol	52.65	68.98
PGSC0003DMT400060947	Potato	cytosol	52.65	68.98
PGSC0003DMT400010948	Potato	cytosol	63.86	66.13
PGSC0003DMT400081996	Potato	cytosol	62.62	65.26
VIT_15s0046g00400.t01	Wine grape	cytosol	47.35	56.3
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.81	54.36
VIT_15s0046g00390.t01	Wine grape	nucleus	43.93	52.42
VIT_15s0046g00410.t01	Wine grape	cytosol	28.66	50.83
VIT_15s0046g00380.t01	Wine grape	cytosol	36.76	47.39
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.58	47.17
VIT_00s0726g00020.t01	Wine grape	extracellular	16.82	46.96
PGSC0003DMT400043047	Potato	cytosol	12.46	21.74
PGSC0003DMT400043050	Potato	nucleus	20.87	17.59

Protein Annotations

EntrezGene:102602007	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M1BMM6	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400018878
PGSC:PGSC0003DMG400018878	EnsemblPlants:PGSC0003DMT400048586	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000294EC1D	RefSeq:XP_006362138.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

Ubiquitin ligase SINAT3 [Source:PGSC_GENE;Acc:PGSC0003DMG400018878]

Coordinates

chr10:+:5268216..5276000

Molecular Weight (calculated)

36367.2 Da

IEP (calculated)

7.281

GRAVY (calculated)

-0.471

Length

321 amino acids

Sequence
(BLAST)

001: MESDSIECIS SLDGIDVNEI VHSQLFSSSK TPHNNNNNNN NKNNNSVRPA TSVHELLECP VCTNSMYPPI HQCHNGHTIC STCKERVHNR CPTCRQELGD
101: IRCLALEKVA ESLELPCKYG SLGCPVIFPY YSKLKHEAMC NFRPYNCPYA GSECSIVGDI PYLVAHLRDD HKVDMHSGCT FNHRYVKSNP REVENATWML
201: TVFNCFGQYF CLHFEAFQLG VAPVYMAFLR FMGDETDARN YSYSLEVGGN GRKLIWEGTP RSIRDSHRKV RDSHDGLIIQ RNMALFFSGG DRKELKLRVT
301: GKIWKEQQNP DGGACIPNLC S

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.