Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g02240.t01 | |
| VIT_17s0000g07490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61790.1 | VIT_17s0000g07490.t01 | AT1G19010.1 | 21798944 |
| AT3G61790.1 | VIT_01s0010g02240.t01 | AT3G26050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 70.43 | 76.42 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 99.13 | 45.78 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 70.43 | 30.11 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 60.87 | 29.05 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 67.83 | 28.89 |
| KRG97189 | Soybean | nucleus | 48.7 | 17.83 |
| Solyc03g083270.2.1 | Tomato | cytosol | 46.96 | 17.25 |
| PGSC0003DMT400023575 | Potato | cytosol | 46.96 | 17.2 |
| Solyc06g051980.2.1 | Tomato | cytosol | 46.96 | 17.14 |
| PGSC0003DMT400050427 | Potato | cytosol | 46.96 | 17.14 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 46.96 | 16.82 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 46.09 | 16.77 |
| KRH68916 | Soybean | nucleus | 47.83 | 16.77 |
| CDX92848 | Canola | nucleus | 44.35 | 16.72 |
| Solyc05g050580.2.1 | Tomato | nucleus | 47.83 | 16.62 |
| CDY14268 | Canola | nucleus | 46.09 | 16.56 |
| Bra010392.1-P | Field mustard | nucleus | 46.09 | 16.56 |
| PGSC0003DMT400018049 | Potato | nucleus | 47.83 | 16.52 |
| CDX97399 | Canola | nucleus | 46.09 | 16.51 |
| Solyc10g009420.2.1 | Tomato | nucleus | 45.22 | 16.46 |
| VIT_13s0139g00150.t01 | Wine grape | cytosol, nucleus, plastid | 43.48 | 16.39 |
| Bra003473.1-P | Field mustard | nucleus | 45.22 | 16.35 |
| GSMUA_Achr6P22600_001 | Banana | cytosol | 44.35 | 16.29 |
| VIT_16s0098g01850.t01 | Wine grape | cytosol | 46.09 | 16.21 |
| CDY19018 | Canola | nucleus | 45.22 | 16.15 |
| CDX89221 | Canola | nucleus | 45.22 | 16.15 |
| Bra026301.1-P | Field mustard | nucleus | 45.22 | 16.15 |
| CDY25077 | Canola | nucleus | 45.22 | 16.1 |
| CDX67865 | Canola | nucleus | 45.22 | 16.1 |
| AT3G61790.1 | Thale cress | nucleus | 45.22 | 15.95 |
| CDX89132 | Canola | cytosol | 45.22 | 15.95 |
| Solyc01g096020.2.1 | Tomato | cytosol | 46.09 | 15.92 |
| AT4G27880.1 | Thale cress | nucleus | 45.22 | 15.9 |
| PGSC0003DMT400000649 | Potato | cytosol | 46.09 | 15.77 |
| CDY43950 | Canola | nucleus | 44.35 | 15.69 |
| Bra014421.1-P | Field mustard | cytosol | 43.48 | 15.62 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 41.74 | 15.24 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 39.13 | 14.61 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.61 | 14.08 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 15.65 | 9.94 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 0.87 | 0.5 |
Protein Annotations
| EntrezGene:104878492 | Gene3D:2.60.210.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | ProteinID:CCB61124 | ProteinID:CCB61124.1 |
| UniProt:F6I2F7 | EMBL:FN596572 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | PFAM:PF03145 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF34 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002109191 |
| ArrayExpress:VIT_00s0726g00020 | EnsemblPlantsGene:VIT_00s0726g00020 | EnsemblPlants:VIT_00s0726g00020.t01 | RefSeq:XP_010647307.1 | SEG:seg | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F6I2F7]
Coordinates
chrUn:-:34697505..34697923
Molecular Weight (calculated)
12594.2 Da
IEP (calculated)
7.243
GRAVY (calculated)
0.005
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: IINCYGKYFC VHTEAFFQAS TPICVVFLSL TGNHAEACNY SCSLEIGGNG RKLTFEGIPR SIRESERSLE SADSLIVLGS MVHSLGGETR EPKLEITCRI
101: RKSQIPMCAC VDKTG
101: RKSQIPMCAC VDKTG
001: METDSIDSVI DDDEIHQKHQ FSSTKSQGGA TVVISPATSV YELLECPVCT NSMYPPIHQV FQCFGQYFCL HFEAFQLGMA PVYMAFLRFM GDEDDARNYT
101: YSLEVGGSGR KQTWEGTPRS VRDSHRKVRD SHDGLIIQRN MALFFSGGDK KELKLRVTGR IWKEQQNPDS GVCITSMCSS
101: YSLEVGGSGR KQTWEGTPRS VRDSHRKVRD SHDGLIIQRN MALFFSGGDK KELKLRVTGR IWKEQQNPDS GVCITSMCSS
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.