Factsheet for Solyc01g096020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000649	Potato	cytosol	99.7	98.81
Solyc10g009420.2.1	Tomato	nucleus	84.38	88.92
VIT_02s0025g01660.t01	Wine grape	cytosol	84.08	88.61
Solyc05g050580.2.1	Tomato	nucleus	85.89	86.4
Solyc03g083270.2.1	Tomato	cytosol	81.08	86.26
Solyc06g051980.2.1	Tomato	cytosol	80.18	84.76
KRG97189	Soybean	nucleus	77.78	82.48
GSMUA_Achr5P06970_001	Banana	cytosol	76.88	79.01
KRH68916	Soybean	nucleus	75.98	77.13
Solyc01g006190.2.1	Tomato	cytosol	60.66	65.58
Solyc02g069880.2.1	Tomato	cytosol	38.74	63.86
Solyc06g017910.1.1	Tomato	cytosol	16.22	62.07
Solyc10g080570.1.1	Tomato	cytosol	54.65	60.07
VIT_15s0046g00400.t01	Wine grape	cytosol	45.95	56.67
VIT_00s0426g00040.t01	Wine grape	mitochondrion	39.34	54.36
VIT_15s0046g00390.t01	Wine grape	nucleus	42.64	52.79
VIT_15s0046g00410.t01	Wine grape	cytosol	28.23	51.93
VIT_15s0046g00380.t01	Wine grape	cytosol	35.14	46.99
VIT_00s0726g00020.t01	Wine grape	extracellular	15.92	46.09
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.41	45.28
Solyc03g036460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.32	23.08
Solyc03g034460.2.1	Tomato	nucleus	19.22	17.78
Solyc03g034450.2.1	Tomato	nucleus	20.12	17.09
Solyc03g042550.1.1	Tomato	nucleus	18.32	16.94
Solyc03g042520.1.1	Tomato	nucleus	13.81	14.84

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K4AZZ1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g096020.2	EnsemblPlants:Solyc01g096020.2.1	InterPro:TRAF-like	UniParc:UPI00027676BE
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4AZZ1]

Coordinates

chr1:-:87114141..87117777

Molecular Weight (calculated)

37520.5 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.426

Length

333 amino acids

Sequence
(BLAST)

001: MEFDSIECVS SSDGIEEDEI PQLHPHIIRS QFSSSKTTTH KNNNGSSILC EGNNGGIAIH PATSVHELLE CPVCTNSMYP PIHQCHNGHT ICSTCKARVH
101: NRCPTCRQEL GDIRCLALEK VAESLELPCK FGSLGCPEIF PYYSKLKHEA ACNFRPYNCP YAGSECAAVG DIPYLVTHLR DDHKVDMHSG CTFNHRYVKS
201: NPREVENATW MLTVFNCFGQ YFCLHFEAFQ LGMAPVYMAF LRFMGDETDA QNYTYSLEVG GNGRKLIWEG TPRSIRDSHR KVRDSHDGLV IQRNMALFFS
301: GGDRKELKLR VTGRIWKEQQ NPDEGACIPN LCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.