Factsheet for VIT_15s0046g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g02240.t01
VIT_17s0000g07490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT3G61790.1	VIT_01s0010g02240.t01	AT3G26050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g00400.t01	Wine grape	cytosol	76.8	51.48
VIT_15s0046g00390.t01	Wine grape	nucleus	75.69	50.93
VIT_00s0426g00040.t01	Wine grape	mitochondrion	59.67	44.81
VIT_15s0046g00380.t01	Wine grape	cytosol	46.96	34.14
VIT_02s0025g01660.t01	Wine grape	cytosol	53.59	30.7
PGSC0003DMT400050427	Potato	cytosol	52.49	30.16
Solyc03g083270.2.1	Tomato	cytosol	51.93	30.03
GSMUA_Achr6P22600_001	Banana	cytosol	51.93	30.03
PGSC0003DMT400023575	Potato	cytosol	51.93	29.94
Solyc06g051980.2.1	Tomato	cytosol	51.93	29.84
VIT_16s0098g01850.t01	Wine grape	cytosol	53.59	29.66
Bra003473.1-P	Field mustard	nucleus	51.93	29.56
CDX97399	Canola	nucleus	51.93	29.28
AT3G61790.1	Thale cress	nucleus	52.49	29.14
Solyc10g009420.2.1	Tomato	nucleus	50.83	29.11
CDY25077	Canola	nucleus	51.93	29.1
CDX67865	Canola	nucleus	51.93	29.1
CDY14268	Canola	nucleus	51.38	29.06
Bra014421.1-P	Field mustard	cytosol	51.38	29.06
Bra010392.1-P	Field mustard	nucleus	51.38	29.06
PGSC0003DMT400018049	Potato	nucleus	53.04	28.83
Solyc05g050580.2.1	Tomato	nucleus	52.49	28.7
PGSC0003DMT400048586	Potato	mitochondrion	50.83	28.66
CDX89132	Canola	cytosol	51.38	28.53
CDX92848	Canola	nucleus	48.07	28.52
AT4G27880.1	Thale cress	nucleus	51.38	28.44
KRG97189	Soybean	nucleus	49.17	28.34
CDY43950	Canola	nucleus	50.83	28.31
CDY19018	Canola	nucleus	50.28	28.26
CDX89221	Canola	nucleus	50.28	28.26
Bra026301.1-P	Field mustard	nucleus	50.28	28.26
VIT_06s0004g01130.t01	Wine grape	cytosol	48.07	28.25
Solyc01g096020.2.1	Tomato	cytosol	51.93	28.23
PGSC0003DMT400000649	Potato	cytosol	51.93	27.98
KRH68916	Soybean	nucleus	49.17	27.13
VIT_08s0007g06740.t01	Wine grape	cytosol	46.96	26.98
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	45.3	26.89
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	47.51	24.71
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	13.81	23.58
VIT_14s0006g01870.t01	Wine grape	cytosol	18.78	17.0
VIT_00s0726g00020.t01	Wine grape	extracellular	9.94	15.65

Protein Annotations

EntrezGene:100267384	MapMan:19.2.2.1.5.3.5	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:CBI40554	ProteinID:CBI40554.3
UniProt:D7UCT9	EMBL:FN596755	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF34
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00015CDB8A	ArrayExpress:VIT_15s0046g00410
EnsemblPlantsGene:VIT_15s0046g00410	EnsemblPlants:VIT_15s0046g00410.t01	RefSeq:XP_003633942	RefSeq:XP_003633942.1	RefSeq:XP_003633942.2	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7UCT9]

Coordinates

chr15:+:17397078..17399141

Molecular Weight (calculated)

20783.1 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.004

Length

181 amino acids

Sequence
(BLAST)

001: MGNCVVPGDL HSLTMFEELV KCSVCFEYMN RPIYQCHNGH TLCSSCKARV LNKCTSCRQQ LGDIRCLALE KMTESLQLHC KYEEFGCPEI MHEDSCNFRP
101: YSCPWPGLPC SAVGDIPFLV SHLTDYHKAV MFNGCDFELE FLIEDLRKHS GCRWLAIIIN CYGKYFCVHT EAFLFAWYSS A

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.