Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g02240.t01 | |
| VIT_17s0000g07490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61790.1 | VIT_17s0000g07490.t01 | AT1G19010.1 | 21798944 |
| AT3G61790.1 | VIT_01s0010g02240.t01 | AT3G26050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 76.42 | 70.43 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 96.23 | 40.96 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 61.32 | 26.97 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 66.98 | 26.3 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 66.04 | 26.02 |
| KRG97189 | Soybean | nucleus | 48.11 | 16.24 |
| CDX92848 | Canola | nucleus | 46.23 | 16.07 |
| Solyc03g083270.2.1 | Tomato | cytosol | 46.23 | 15.65 |
| PGSC0003DMT400023575 | Potato | cytosol | 46.23 | 15.61 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 47.17 | 15.58 |
| Solyc06g051980.2.1 | Tomato | cytosol | 46.23 | 15.56 |
| PGSC0003DMT400050427 | Potato | cytosol | 46.23 | 15.56 |
| KRH68916 | Soybean | nucleus | 48.11 | 15.55 |
| VIT_13s0139g00150.t01 | Wine grape | cytosol, nucleus, plastid | 44.34 | 15.41 |
| GSMUA_Achr6P22600_001 | Banana | cytosol | 45.28 | 15.34 |
| CDY14268 | Canola | nucleus | 46.23 | 15.31 |
| Bra010392.1-P | Field mustard | nucleus | 46.23 | 15.31 |
| CDX97399 | Canola | nucleus | 46.23 | 15.26 |
| CDY19018 | Canola | nucleus | 46.23 | 15.22 |
| CDX89221 | Canola | nucleus | 46.23 | 15.22 |
| Bra026301.1-P | Field mustard | nucleus | 46.23 | 15.22 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 45.28 | 15.19 |
| Solyc10g009420.2.1 | Tomato | nucleus | 45.28 | 15.19 |
| Solyc05g050580.2.1 | Tomato | nucleus | 47.17 | 15.11 |
| PGSC0003DMT400018049 | Potato | nucleus | 47.17 | 15.02 |
| Bra003473.1-P | Field mustard | nucleus | 44.34 | 14.78 |
| Bra014421.1-P | Field mustard | cytosol | 44.34 | 14.69 |
| VIT_16s0098g01850.t01 | Wine grape | cytosol | 45.28 | 14.68 |
| AT4G27880.1 | Thale cress | nucleus | 45.28 | 14.68 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 43.4 | 14.6 |
| CDY25077 | Canola | nucleus | 44.34 | 14.55 |
| CDX67865 | Canola | nucleus | 44.34 | 14.55 |
| CDY43950 | Canola | nucleus | 44.34 | 14.46 |
| CDX89132 | Canola | cytosol | 44.34 | 14.42 |
| AT3G61790.1 | Thale cress | nucleus | 44.34 | 14.42 |
| Solyc01g096020.2.1 | Tomato | cytosol | 45.28 | 14.41 |
| PGSC0003DMT400000649 | Potato | cytosol | 45.28 | 14.29 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 40.57 | 13.96 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 23.58 | 13.81 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 44.34 | 13.51 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 2.83 | 1.5 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | ProteinID:CBI18771 | ProteinID:CBI18771.3 | UniProt:D7SSY7 |
| EMBL:FN595002 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | PFAM:PF03145 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF34 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0001BE15B8 | ArrayExpress:VIT_00s0663g00030 |
| EnsemblPlantsGene:VIT_00s0663g00030 | EnsemblPlants:VIT_00s0663g00030.t01 | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7SSY7]
Coordinates
chrUn:+:33789878..33790897
Molecular Weight (calculated)
11876.3 Da
IEP (calculated)
4.817
GRAVY (calculated)
0.172
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MICEFKCRFL IADVNEEETC TWMVKIINCY GKYFCVHTEA FFQASTPICV VFLSLTGNHA EACNYSCSLE IGGNGRKLTF EGIPRSIRES ERSLESADSL
101: IVLGSM
101: IVLGSM
001: MDILYVQPVN QECIIALEKV AESLELPCKY YNLGCLGIFP YYSKLKHESQ CNFRPYSCPY AGSECAAVGD ITFLVAHLRD DHKVDMHTGC TFNHRYVKSN
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS
Arabidopsis Description
TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.