CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14268	Canola	nucleus	92.13	87.81
CDY19018	Canola	nucleus	91.8	86.96
CDX97399	Canola	nucleus	91.48	86.92
CDX89221	Canola	nucleus	91.15	86.34
AT4G27880.1	Thale cress	nucleus	90.49	84.4
PGSC0003DMT400023575	Potato	cytosol	81.64	79.3
Solyc03g083270.2.1	Tomato	cytosol	81.31	79.23
VIT_02s0025g01660.t01	Wine grape	cytosol	81.97	79.11
PGSC0003DMT400050427	Potato	cytosol	80.66	78.1
Solyc06g051980.2.1	Tomato	cytosol	80.0	77.46
CDX67865	Canola	nucleus	80.66	76.16
CDY25077	Canola	nucleus	80.66	76.16
KRG97189	Soybean	nucleus	78.36	76.11
GSMUA_Achr5P06970_001	Banana	cytosol	79.34	74.69
CDX89132	Canola	cytosol	79.34	74.23
CDY43950	Canola	nucleus	79.02	74.15
KRH68916	Soybean	nucleus	77.05	71.65
CDY64066	Canola	cytosol	24.59	69.44
CDY56244	Canola	cytosol	64.59	68.17
CDY57244	Canola	cytosol	68.52	67.86
CDX88968	Canola	cytosol	68.85	67.52
CDY67927	Canola	cytosol	68.85	67.52
CDX71977	Canola	cytosol	68.52	67.42
CDY06889	Canola	cytosol	64.92	66.67
CDY06056	Canola	cytosol	57.05	66.41
CDY14808	Canola	cytosol	64.59	65.23
CDY35390	Canola	nucleus	64.26	63.84
CDY22549	Canola	nucleus	64.59	63.75
CDY67899	Canola	cytosol, plastid	32.13	59.04
CDY67278	Canola	cytosol	15.08	56.79
VIT_15s0046g00400.t01	Wine grape	cytosol	46.89	52.96
CDX75727	Canola	cytosol	36.39	51.87
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.98	51.87
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	46.56	51.45
CDY38819	Canola	nucleus	32.46	51.03
CDX82523	Canola	cytosol	35.41	50.47
VIT_15s0046g00390.t01	Wine grape	nucleus	44.26	50.19
CDY14650	Canola	cytosol, nucleus, plastid	35.74	49.32
VIT_15s0046g00410.t01	Wine grape	cytosol	28.52	48.07
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	16.07	46.23
VIT_00s0726g00020.t01	Wine grape	extracellular	16.72	44.35
VIT_15s0046g00380.t01	Wine grape	cytosol	35.74	43.78
CDY11709	Canola	nucleus	14.75	27.27
CDY52473	Canola	nucleus	21.97	23.59
CDY10787	Canola	plastid	22.3	23.53
CDY01699	Canola	nucleus, plastid	21.64	23.4
CDX99687	Canola	nucleus	21.64	23.32
CDY12498	Canola	nucleus	19.67	22.06
CDY25763	Canola	nucleus	19.34	21.69
CDY47873	Canola	nucleus	21.97	20.68
CDY27008	Canola	nucleus	22.3	20.67
CDY01695	Canola	nucleus	20.33	20.06
CDY36209	Canola	plastid	13.77	19.91
CDY01756	Canola	cytosol, nucleus, plastid	19.02	19.53
CDX96138	Canola	nucleus	20.66	18.53
CDX83363	Canola	cytosol, nucleus, plasma membrane	10.82	18.44
CDX95911	Canola	cytosol, nucleus, plastid	17.7	18.37
CDY36211	Canola	nucleus	20.98	17.73
CDX96140	Canola	cytosol, nucleus, plastid	19.67	17.19
CDY70665	Canola	nucleus	17.38	16.36
CDY01757	Canola	cytosol	2.62	15.09
CDY01758	Canola	cytosol	13.11	9.15

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078DZV1	EnsemblPlants:CDX92848	ProteinID:CDX92848	ProteinID:CDX92848.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00154684001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EDB01E
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

BnaC07g41060D

Coordinates

chrLK031873:+:1111066..1112139

Molecular Weight (calculated)

34618.5 Da

IEP (calculated)

7.756

GRAVY (calculated)

-0.352

Length

305 amino acids

Sequence
(BLAST)

001: METESMDCES YGPHHFSSTT KTHAVVTNTV GPAATSVYEL LECPVCTFSM YPPIHQCQNG HTFCSTCKVR VHNRCPTCRQ ELGDIRCLAL EKVAESLELP
101: CKYFNLGCPE IFPYYSKLKH ESLCNFRPYG CPYAGSECGV LGGIPFLVAH LRDDHKVDMH AASTFNHRYV KSNPREVENA TWMLTVFHCF GQYFCLHFEA
201: FQLGMGPVYM AFLRFMGDEE EARRYSYSLE VGGSGRKLTW EGTPRSIRDS HRKVRDSNDG LIIQRNMALF FSGGDRKELK LRVTGKIWKK LHSPDSGVCM
301: PNMSS

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.