Factsheet for PGSC0003DMT400023575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083270.2.1	Tomato	cytosol	99.04	99.36
PGSC0003DMT400050427	Potato	cytosol	91.08	90.79
VIT_02s0025g01660.t01	Wine grape	cytosol	89.81	89.24
PGSC0003DMT400048586	Potato	mitochondrion	86.31	84.42
CDX92848	Canola	nucleus	79.3	81.64
GSMUA_Achr5P06970_001	Banana	cytosol	84.08	81.48
PGSC0003DMT400000649	Potato	cytosol	86.31	80.65
PGSC0003DMT400018049	Potato	nucleus	85.35	80.48
Bra010392.1-P	Field mustard	nucleus	81.85	80.31
CDY14268	Canola	nucleus	81.85	80.31
CDX97399	Canola	nucleus	81.53	79.75
CDY19018	Canola	nucleus	81.21	79.19
Bra026301.1-P	Field mustard	nucleus	81.21	79.19
CDX89221	Canola	nucleus	81.21	79.19
AT4G27880.1	Thale cress	nucleus	81.21	77.98
PGSC0003DMT400054414	Potato	cytosol	71.34	73.44
PGSC0003DMT400060943	Potato	cytosol	55.1	70.61
PGSC0003DMT400060947	Potato	cytosol	55.1	70.61
PGSC0003DMT400081996	Potato	cytosol	64.01	65.26
PGSC0003DMT400010948	Potato	cytosol	64.33	65.16
VIT_15s0046g00400.t01	Wine grape	cytosol	49.36	57.41
VIT_00s0426g00040.t01	Wine grape	mitochondrion	42.36	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	45.86	53.53
VIT_15s0046g00410.t01	Wine grape	cytosol	29.94	51.93
VIT_15s0046g00380.t01	Wine grape	cytosol	37.58	47.39
VIT_00s0726g00020.t01	Wine grape	extracellular	17.2	46.96
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.61	46.23
PGSC0003DMT400043047	Potato	cytosol	12.74	21.74
PGSC0003DMT400043050	Potato	nucleus	21.02	17.32

Protein Annotations

EntrezGene:102602506	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M1AIM2	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400009129
PGSC:PGSC0003DMG400009129	EnsemblPlants:PGSC0003DMT400023575	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42
InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000296DBA6	RefSeq:XP_006350542.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

Ubiquitin ligase SINAT3 [Source:PGSC_GENE;Acc:PGSC0003DMG400009129]

Coordinates

chr3:+:48352425..48356918

Molecular Weight (calculated)

35832.8 Da

IEP (calculated)

6.836

GRAVY (calculated)

-0.413

Length

314 amino acids

Sequence
(BLAST)

001: MEMENIECVS STDGIEDEEI QLSHNHQFSS AKPHNILLPG LAPTSVHELL ECPVCTNSMY PPIHQCHNGH TLCSTCKTRV HNRCPTCRQE LGDIRCLALE
101: KVAESLELPC KYFSLGCPEI FPYYSKLKHE ALCNFRPYNC PYAGSECSVT GDIPYLVSHL RDDHKVDMHT GCTFNHRYVK SNPREVENAT WMLTVFHCFG
201: QYFCLHFEAF QLGMAPVYMA FLRFMGDESE ARNYSYSLEV GGNGRKLIWE GTPRSVRDSH RKVRDSHDGL IIQRNMALFF SGGDRKELKL RVTGRIWKEQ
301: QNPEGGVCIP NLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.