Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010392.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX97399 | Canola | nucleus | 97.19 | 96.88 |
| CDY19018 | Canola | nucleus | 93.12 | 92.55 |
| CDX92848 | Canola | nucleus | 87.81 | 92.13 |
| CDX89221 | Canola | nucleus | 92.5 | 91.93 |
| AT4G27880.1 | Thale cress | nucleus | 91.88 | 89.91 |
| PGSC0003DMT400023575 | Potato | cytosol | 80.31 | 81.85 |
| Solyc03g083270.2.1 | Tomato | cytosol | 80.0 | 81.79 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 80.62 | 81.65 |
| PGSC0003DMT400050427 | Potato | cytosol | 78.12 | 79.37 |
| Solyc06g051980.2.1 | Tomato | cytosol | 77.5 | 78.73 |
| KRG97189 | Soybean | nucleus | 76.25 | 77.71 |
| CDY25077 | Canola | nucleus | 78.12 | 77.4 |
| CDX67865 | Canola | nucleus | 78.12 | 77.4 |
| GSMUA_Achr5P06970_001 | Banana | cytosol | 76.88 | 75.93 |
| CDX89132 | Canola | cytosol | 76.88 | 75.46 |
| CDY43950 | Canola | nucleus | 76.56 | 75.38 |
| KRH68916 | Soybean | nucleus | 74.38 | 72.56 |
| CDY64066 | Canola | cytosol | 23.75 | 70.37 |
| CDY56244 | Canola | cytosol | 62.81 | 69.55 |
| CDY57244 | Canola | cytosol | 66.56 | 69.16 |
| CDX88968 | Canola | cytosol | 67.19 | 69.13 |
| CDY67927 | Canola | cytosol | 67.19 | 69.13 |
| CDX71977 | Canola | cytosol | 66.56 | 68.71 |
| CDY06889 | Canola | cytosol | 63.12 | 68.01 |
| CDY06056 | Canola | cytosol | 55.31 | 67.56 |
| CDY14808 | Canola | cytosol | 62.81 | 66.56 |
| CDY35390 | Canola | nucleus | 62.81 | 65.47 |
| CDY22549 | Canola | nucleus | 62.81 | 65.05 |
| CDY67899 | Canola | cytosol, plastid | 30.94 | 59.64 |
| CDY67278 | Canola | cytosol | 15.0 | 59.26 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 47.19 | 55.93 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 41.56 | 55.19 |
| CDX75727 | Canola | cytosol | 35.62 | 53.27 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 45.31 | 52.54 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 44.06 | 52.42 |
| CDY38819 | Canola | nucleus | 31.56 | 52.06 |
| CDX82523 | Canola | cytosol | 34.69 | 51.87 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 29.06 | 51.38 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 34.06 | 49.32 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 15.31 | 46.23 |
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 16.56 | 46.09 |
| VIT_15s0046g00380.t01 | Wine grape | cytosol | 35.31 | 45.38 |
| CDY11709 | Canola | nucleus | 14.38 | 27.88 |
| CDY01699 | Canola | nucleus, plastid | 21.56 | 24.47 |
| CDY10787 | Canola | plastid | 21.88 | 24.22 |
| CDY52473 | Canola | nucleus | 21.25 | 23.94 |
| CDX99687 | Canola | nucleus | 20.94 | 23.67 |
| CDY12498 | Canola | nucleus | 19.06 | 22.43 |
| CDY25763 | Canola | nucleus | 18.75 | 22.06 |
| CDY47873 | Canola | nucleus | 21.88 | 21.6 |
| CDY27008 | Canola | nucleus | 22.19 | 21.58 |
| CDY01695 | Canola | nucleus | 19.38 | 20.06 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.12 | 19.53 |
| CDX96138 | Canola | nucleus | 20.31 | 19.12 |
| CDY36209 | Canola | plastid | 12.5 | 18.96 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.19 | 18.71 |
| CDY36211 | Canola | nucleus | 20.94 | 18.56 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.31 | 18.44 |
| CDY70665 | Canola | nucleus | 17.81 | 17.59 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 18.44 | 16.91 |
| CDY01757 | Canola | cytosol | 2.5 | 15.09 |
| CDY01758 | Canola | cytosol | 11.56 | 8.47 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078FPK3 | UniProt:A0A078FPK3 | EnsemblPlants:CDY14268 | ProteinID:CDY14268 | ProteinID:CDY14268.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00078852001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF42 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0002545689 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | : | : | : | : | : |
Description
BnaA08g13990DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FPK3]
Coordinates
chrLK032041:-:553882..555792
Molecular Weight (calculated)
36009.8 Da
IEP (calculated)
7.121
GRAVY (calculated)
-0.366
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: METESMDCES STRSITNDNG TYHFSSTKNH AGAAAVVTNI VGPTTTAAAT SVYELLECPL CTFSMYPPIH QCHNGHTLCS TCKVRVHNRC PTCRQELGDI
101: RCLALEKVAE SLELPCKYYN LGCPEIFPYY SKLKHESLCN FRPYSCPYAG SECGVVGDIP FLVSHLRDDH KVDMHAGSTF NHRYVKSNPR EVENATWMLT
201: VFQCFGQYFC LHFEAFQLGM GPVYMAFLRF MGDEEEARSY SYSLEVGGSG RKLTWEGAPR SIRDSHRKVR DSNDGLIIQR NMALFFSGGD RKELKLRVTG
301: KIWKEQHSPD SGLCIPNLSS
101: RCLALEKVAE SLELPCKYYN LGCPEIFPYY SKLKHESLCN FRPYSCPYAG SECGVVGDIP FLVSHLRDDH KVDMHAGSTF NHRYVKSNPR EVENATWMLT
201: VFQCFGQYFC LHFEAFQLGM GPVYMAFLRF MGDEEEARSY SYSLEVGGSG RKLTWEGAPR SIRDSHRKVR DSNDGLIIQR NMALFFSGGD RKELKLRVTG
301: KIWKEQHSPD SGLCIPNLSS
001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS
Arabidopsis Description
SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.