Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25763 | Canola | nucleus | 96.69 | 96.69 |
| Bra012354.1-P | Field mustard | cytosol | 96.32 | 96.32 |
| CDY47873 | Canola | nucleus | 53.31 | 44.75 |
| CDY27008 | Canola | nucleus | 53.68 | 44.38 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 13.6 | 40.66 |
| CDY11709 | Canola | nucleus | 24.63 | 40.61 |
| CDY01699 | Canola | nucleus, plastid | 38.97 | 37.59 |
| CDX99687 | Canola | nucleus | 37.87 | 36.4 |
| CDY52473 | Canola | nucleus | 37.87 | 36.27 |
| CDY10787 | Canola | plastid | 37.87 | 35.64 |
| CDY70665 | Canola | nucleus | 41.54 | 34.88 |
| CDY01695 | Canola | nucleus | 38.24 | 33.66 |
| CDY36209 | Canola | plastid | 25.0 | 32.23 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 34.56 | 31.97 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 40.81 | 31.81 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 34.56 | 31.65 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 20.59 | 31.28 |
| CDX96138 | Canola | nucleus | 37.87 | 30.29 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 23.53 | 29.91 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.9 | 29.41 |
| KRH58384 | Soybean | nucleus | 34.56 | 29.38 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 27.21 | 29.37 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.32 | 29.0 |
| KRH42263 | Soybean | nucleus | 33.82 | 28.75 |
| CDY36211 | Canola | nucleus | 37.5 | 28.25 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 26.47 | 27.07 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 27.21 | 27.01 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 27.21 | 27.01 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 27.21 | 27.01 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 26.84 | 26.64 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 26.84 | 26.64 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 26.47 | 26.18 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 26.47 | 25.99 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 26.1 | 25.82 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 25.37 | 25.65 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 26.47 | 25.53 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 25.74 | 25.18 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 26.1 | 25.18 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 24.63 | 24.91 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 27.94 | 24.76 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 26.47 | 24.66 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 26.47 | 24.66 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 24.26 | 24.63 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 25.37 | 24.47 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 25.37 | 24.47 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.54 | 24.46 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 26.1 | 24.23 |
| Solyc03g034460.2.1 | Tomato | nucleus | 31.62 | 23.89 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 24.63 | 23.84 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 23.16 | 23.77 |
| KXG32009 | Sorghum | nucleus | 25.74 | 23.65 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 23.9 | 23.64 |
| CDY67278 | Canola | cytosol | 6.99 | 23.46 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 26.47 | 23.45 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 25.74 | 23.41 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 25.74 | 23.33 |
| Solyc03g042550.1.1 | Tomato | nucleus | 30.88 | 23.33 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.79 | 23.31 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 24.26 | 23.24 |
| PGSC0003DMT400043050 | Potato | nucleus | 32.35 | 23.1 |
| OQU77422 | Sorghum | cytosol | 24.26 | 23.08 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 25.37 | 22.92 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 25.0 | 22.9 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 25.0 | 22.9 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 23.53 | 22.86 |
| KXG37941 | Sorghum | cytosol | 23.53 | 22.86 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 25.0 | 22.67 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 23.9 | 22.26 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 24.26 | 22.22 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 25.74 | 22.22 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 20.59 | 22.13 |
| TraesCSU01G045900.1 | Wheat | cytosol | 24.26 | 22.07 |
| EES00387 | Sorghum | nucleus | 25.74 | 21.94 |
| Solyc03g034450.2.1 | Tomato | nucleus | 31.62 | 21.94 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 19.85 | 21.86 |
| Solyc03g042520.1.1 | Tomato | nucleus | 24.63 | 21.61 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 15.81 | 21.5 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.79 | 21.38 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 25.37 | 21.1 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.37 | 20.85 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.0 | 20.73 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 21.32 | 20.71 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 25.37 | 20.6 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.37 | 20.54 |
| EES17731 | Sorghum | nucleus | 26.1 | 20.52 |
| Zm00001d041049_P001 | Maize | nucleus | 24.63 | 20.49 |
| KXG32014 | Sorghum | nucleus | 16.54 | 20.45 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 25.37 | 20.35 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 26.1 | 20.17 |
| OQU78944 | Sorghum | nucleus | 23.9 | 19.94 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 20.59 | 19.93 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 24.26 | 19.88 |
| CDX92848 | Canola | nucleus | 22.06 | 19.67 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 25.37 | 19.49 |
| CDX97399 | Canola | nucleus | 22.79 | 19.31 |
| OQU86453 | Sorghum | cytosol | 15.07 | 19.16 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 23.9 | 19.12 |
| CDY14268 | Canola | nucleus | 22.43 | 19.06 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.0 | 18.99 |
| CDY35390 | Canola | nucleus | 21.32 | 18.89 |
| CDY01757 | Canola | cytosol | 3.68 | 18.87 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 23.53 | 18.82 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 23.53 | 18.82 |
| CDY43950 | Canola | nucleus | 22.43 | 18.77 |
| KXG21322 | Sorghum | nucleus | 25.74 | 18.72 |
| CDX89132 | Canola | cytosol | 22.43 | 18.71 |
| CDY67927 | Canola | cytosol | 21.32 | 18.65 |
| CDX89221 | Canola | nucleus | 22.06 | 18.63 |
| CDY19018 | Canola | nucleus | 22.06 | 18.63 |
| CDY57244 | Canola | cytosol | 20.96 | 18.51 |
| CDY22549 | Canola | nucleus | 20.96 | 18.45 |
| CDX71977 | Canola | cytosol | 20.96 | 18.39 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 24.63 | 18.36 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 24.63 | 18.36 |
| TraesCSU01G021700.1 | Wheat | nucleus | 24.63 | 18.36 |
| CDY56244 | Canola | cytosol | 19.49 | 18.34 |
| CDX88968 | Canola | cytosol | 20.96 | 18.33 |
| CDX67865 | Canola | nucleus | 21.69 | 18.27 |
| CDY25077 | Canola | nucleus | 21.69 | 18.27 |
| CDY14808 | Canola | cytosol | 20.22 | 18.21 |
| CDY06889 | Canola | cytosol | 19.85 | 18.18 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 21.69 | 17.88 |
| OQU77425 | Sorghum | nucleus | 23.53 | 17.02 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 21.32 | 17.01 |
| CDY06056 | Canola | cytosol | 16.18 | 16.79 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 22.43 | 16.35 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.43 | 16.27 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 22.43 | 16.27 |
| HORVU2Hr1G118840.1 | Barley | plastid | 22.06 | 16.17 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 22.43 | 15.97 |
| TraesCSU01G231400.1 | Wheat | nucleus | 19.85 | 15.61 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 22.06 | 14.81 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 15.44 | 14.74 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 23.53 | 14.04 |
| EES17735 | Sorghum | mitochondrion | 23.16 | 14.03 |
| TraesCS1A01G070000.1 | Wheat | plastid | 12.5 | 13.99 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 23.53 | 13.94 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 23.16 | 13.58 |
| CDX75727 | Canola | cytosol | 10.29 | 13.08 |
| CDX82523 | Canola | cytosol | 10.29 | 13.08 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 13.24 | 13.04 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 10.29 | 12.67 |
| CDY01758 | Canola | cytosol | 19.49 | 12.13 |
| EES02574 | Sorghum | nucleus | 19.85 | 12.05 |
| CDY38819 | Canola | nucleus | 8.09 | 11.34 |
| CDY64066 | Canola | cytosol | 3.68 | 9.26 |
| CDY67899 | Canola | cytosol, plastid | 4.78 | 7.83 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.74 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078FK50 | UniProt:A0A078FK50 | EnsemblPlants:CDY12498 | ProteinID:CDY12498 | ProteinID:CDY12498.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00061816001 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EE07E1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
BnaC07g13380DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078FK50]
Coordinates
chrLK032023:-:395703..396708
Molecular Weight (calculated)
30343.9 Da
IEP (calculated)
7.886
GRAVY (calculated)
-0.158
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQIPPAE NQSSSTTPVS LTLLDPDVLE CPICREPLKI PIFQCENGHL ACSQCCEKVK KICPSCKSPN GYSRCRAMER VIEACRVSCP NAKYGCKENT
101: SFGNRASHEK QCLFAPCFCP VPLNDCNYVG SDKNLRNHIR AKHKDHVIPI VFDTPLTLVM GSSEKIACFQ EKKDGELFVV QAFRKSYGLV VSVNCIAPSA
201: HGLGRFSCCM DVIIDPSIKL KQASTVREIQ KKIHEEPKDS FMLIPSHMLM LTDWSFGIDI CFSRGMDSFI RA
101: SFGNRASHEK QCLFAPCFCP VPLNDCNYVG SDKNLRNHIR AKHKDHVIPI VFDTPLTLVM GSSEKIACFQ EKKDGELFVV QAFRKSYGLV VSVNCIAPSA
201: HGLGRFSCCM DVIIDPSIKL KQASTVREIQ KKIHEEPKDS FMLIPSHMLM LTDWSFGIDI CFSRGMDSFI RA
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.