Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G032100.1 | Wheat | nucleus | 94.12 | 94.74 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 88.89 | 87.93 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 52.72 | 68.75 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 38.13 | 61.4 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 28.32 | 60.75 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 34.42 | 56.03 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 40.52 | 55.52 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 35.73 | 48.24 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 22.22 | 37.23 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 19.83 | 33.21 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 21.57 | 33.11 |
| CDY11709 | Canola | nucleus | 10.68 | 29.7 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.29 | 27.6 |
| PGSC0003DMT400043047 | Potato | cytosol | 10.89 | 27.17 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 17.43 | 26.94 |
| Bra004174.1-P | Field mustard | nucleus | 20.26 | 26.35 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 19.83 | 26.07 |
| CDY52473 | Canola | nucleus | 15.47 | 25.0 |
| Bra025434.1-P | Field mustard | nucleus | 15.47 | 25.0 |
| CDY01699 | Canola | nucleus, plastid | 15.25 | 24.82 |
| CDX99687 | Canola | nucleus | 15.25 | 24.73 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 14.81 | 24.64 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.38 | 24.54 |
| AT1G66630.1 | Thale cress | cytosol | 16.12 | 24.42 |
| AT1G66620.1 | Thale cress | nucleus | 16.56 | 24.28 |
| CDY36209 | Canola | plastid | 11.11 | 24.17 |
| Bra000425.1-P | Field mustard | nucleus | 14.81 | 24.03 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.37 | 24.02 |
| Bra018266.1-P | Field mustard | plastid | 15.03 | 23.88 |
| CDY10787 | Canola | plastid | 15.03 | 23.88 |
| AT5G37890.1 | Thale cress | nucleus | 14.81 | 23.78 |
| CDY12498 | Canola | nucleus | 13.94 | 23.53 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.24 | 23.5 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.03 | 23.47 |
| CDY25763 | Canola | nucleus | 13.73 | 23.16 |
| Bra012354.1-P | Field mustard | cytosol | 13.73 | 23.16 |
| CDY47873 | Canola | nucleus | 16.34 | 23.15 |
| Bra028395.1-P | Field mustard | nucleus | 16.34 | 23.15 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 13.51 | 23.13 |
| AT5G37870.1 | Thale cress | nucleus | 14.16 | 23.13 |
| Bra022858.1-P | Field mustard | nucleus | 15.03 | 22.7 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 12.42 | 22.62 |
| CDY27008 | Canola | nucleus | 16.12 | 22.49 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 14.6 | 22.26 |
| AT1G66610.1 | Thale cress | nucleus | 17.65 | 22.13 |
| AT5G62800.1 | Thale cress | nucleus | 16.78 | 22.13 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 14.38 | 21.93 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 14.16 | 21.89 |
| KRH42263 | Soybean | nucleus | 15.25 | 21.88 |
| Bra004402.1-P | Field mustard | nucleus | 15.03 | 21.77 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 15.9 | 21.73 |
| Solyc03g034460.2.1 | Tomato | nucleus | 16.99 | 21.67 |
| AT5G37900.1 | Thale cress | nucleus | 11.33 | 21.58 |
| PGSC0003DMT400043050 | Potato | nucleus | 17.86 | 21.52 |
| AT1G66650.1 | Thale cress | nucleus | 15.25 | 21.28 |
| KRH58384 | Soybean | nucleus | 14.81 | 21.25 |
| Solyc03g042550.1.1 | Tomato | nucleus | 16.56 | 21.11 |
| AT5G37930.1 | Thale cress | nucleus | 15.9 | 20.92 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.21 | 20.68 |
| AT5G37910.1 | Thale cress | nucleus | 12.42 | 20.65 |
| Solyc03g034450.2.1 | Tomato | nucleus | 17.21 | 20.15 |
| CDY01695 | Canola | nucleus | 13.51 | 20.06 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 8.71 | 19.9 |
| Bra004176.1-P | Field mustard | nucleus | 14.6 | 19.88 |
| CDX96138 | Canola | nucleus | 14.38 | 19.41 |
| CDY36211 | Canola | nucleus | 15.25 | 19.39 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 13.29 | 18.89 |
| CDY70665 | Canola | nucleus | 13.29 | 18.83 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 13.29 | 18.77 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 13.94 | 18.77 |
| AT1G66660.2 | Thale cress | nucleus | 14.16 | 18.68 |
| Bra019710.1-P | Field mustard | nucleus | 13.51 | 18.13 |
| Solyc03g042520.1.1 | Tomato | nucleus | 12.2 | 18.06 |
| CDY01757 | Canola | cytosol | 1.96 | 16.98 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 13.73 | 16.8 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 12.85 | 16.16 |
| CDY01758 | Canola | cytosol | 9.37 | 9.84 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G029400 |
| EnsemblPlants:TraesCS3D01G029400.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:+:10660561..10662223
Molecular Weight (calculated)
51338.5 Da
IEP (calculated)
4.599
GRAVY (calculated)
-0.697
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSSSSKRK AEAQREGESS AKRLNVTVGM EHLDCPICLK PLRPPILQCS VGHFICSYCC TYQVDSKCHL CSEETTFERC FGMEHVVESV TVACSNEMYG
101: CAETVTYYKK EEHKEACPYA PCFCPESGCG FAGPTKVLLE HFTTQHKCPS TTLPDSGTVS LCLQPGLHVL QCTRNSYFFL LSMASEPFGH VISVVCVEPN
201: RRKSKFTCNL SYDCITTGCC GSTSCHIRSS SLSDGLPAVY DLILPKGKVS DDANGIMLRA TINQQALSHS RSCFRGKGPT SALQQRPDTC DDEEDDDDIP
301: KSHRRSHPAK EEEEVEEEDE DDEDNEEEEE EDERPLSVRR SHLAEEEEEE EDERPLSLRR SHPAVQLRPN AYHDDGQGEE DEEDARPVSV SRPRVRGTAP
401: ARVVLQSDTD DEDDFPIAFR SARLRGMRPA PAVQERHYFD TSDEDDLPIA FRPFIRGTA
101: CAETVTYYKK EEHKEACPYA PCFCPESGCG FAGPTKVLLE HFTTQHKCPS TTLPDSGTVS LCLQPGLHVL QCTRNSYFFL LSMASEPFGH VISVVCVEPN
201: RRKSKFTCNL SYDCITTGCC GSTSCHIRSS SLSDGLPAVY DLILPKGKVS DDANGIMLRA TINQQALSHS RSCFRGKGPT SALQQRPDTC DDEEDDDDIP
301: KSHRRSHPAK EEEEVEEEDE DDEDNEEEEE EDERPLSVRR SHLAEEEEEE EDERPLSLRR SHPAVQLRPN AYHDDGQGEE DEEDARPVSV SRPRVRGTAP
401: ARVVLQSDTD DEDDFPIAFR SARLRGMRPA PAVQERHYFD TSDEDDLPIA FRPFIRGTA
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.