Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G66620.1 | Thale cress | nucleus | 52.19 | 61.02 |
| Bra022858.1-P | Field mustard | nucleus | 48.09 | 57.89 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 45.9 | 57.14 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 45.63 | 56.23 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 40.71 | 55.39 |
| Bra004402.1-P | Field mustard | nucleus | 46.45 | 53.63 |
| CDY01757 | Canola | cytosol | 7.65 | 52.83 |
| AT1G66630.1 | Thale cress | cytosol | 41.8 | 50.49 |
| AT5G37910.1 | Thale cress | nucleus | 33.33 | 44.2 |
| AT5G37870.1 | Thale cress | nucleus | 33.88 | 44.13 |
| AT5G37890.1 | Thale cress | nucleus | 32.79 | 41.96 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.38 | 41.76 |
| AT5G37900.1 | Thale cress | nucleus | 26.78 | 40.66 |
| AT5G37930.1 | Thale cress | nucleus | 31.97 | 33.52 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.03 | 30.84 |
| AT1G66650.1 | Thale cress | nucleus | 27.32 | 30.4 |
| AT5G62800.1 | Thale cress | nucleus | 28.69 | 30.17 |
| AT1G66660.2 | Thale cress | nucleus | 28.14 | 29.6 |
| KRH42263 | Soybean | nucleus | 25.41 | 29.06 |
| KRH58384 | Soybean | nucleus | 24.86 | 28.44 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 15.03 | 27.5 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.67 | 27.07 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.12 | 26.7 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 20.49 | 26.6 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 18.31 | 26.59 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 20.22 | 26.33 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 20.22 | 26.24 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 18.85 | 25.94 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 19.4 | 25.91 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 19.95 | 25.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 19.4 | 25.82 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 21.58 | 25.73 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 19.95 | 25.7 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 18.85 | 25.65 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 19.13 | 25.55 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 19.67 | 25.53 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.13 | 25.45 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.58 | 25.37 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 18.85 | 25.18 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 18.85 | 25.09 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 18.58 | 24.82 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.4 | 24.77 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 18.58 | 24.46 |
| KXG32009 | Sorghum | nucleus | 19.67 | 24.32 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 19.4 | 24.23 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.49 | 24.15 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 18.03 | 24.09 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 21.58 | 24.09 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 19.67 | 24.0 |
| PGSC0003DMT400043047 | Potato | cytosol | 12.02 | 23.91 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 18.03 | 23.83 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 21.86 | 23.81 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 18.85 | 23.63 |
| KXG37941 | Sorghum | cytosol | 18.03 | 23.57 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.04 | 23.1 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 18.85 | 23.08 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 18.85 | 23.0 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 21.86 | 22.73 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 18.03 | 22.6 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 19.4 | 22.54 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.57 | 22.53 |
| Solyc03g034460.2.1 | Tomato | nucleus | 22.13 | 22.5 |
| Solyc03g042550.1.1 | Tomato | nucleus | 22.13 | 22.5 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.77 | 22.42 |
| Zm00001d041049_P001 | Maize | nucleus | 19.95 | 22.32 |
| OQU78944 | Sorghum | nucleus | 19.67 | 22.09 |
| AT2G41980.1 | Thale cress | nucleus | 18.31 | 21.97 |
| EES00387 | Sorghum | nucleus | 19.13 | 21.94 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 19.95 | 21.79 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 21.31 | 21.79 |
| AT3G58040.3 | Thale cress | cytosol | 18.31 | 21.75 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.21 | 21.72 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.31 | 21.61 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.85 | 21.56 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 19.4 | 21.39 |
| Solyc03g034450.2.1 | Tomato | nucleus | 22.68 | 21.17 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 17.76 | 21.17 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 11.48 | 21.0 |
| KXG32014 | Sorghum | nucleus | 12.57 | 20.91 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 16.67 | 20.89 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.85 | 20.64 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.57 | 20.36 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.3 | 20.0 |
| AT4G27880.1 | Thale cress | nucleus | 17.76 | 19.88 |
| AT3G61790.1 | Thale cress | nucleus | 17.21 | 19.33 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 15.57 | 19.19 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 15.57 | 19.19 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 12.84 | 19.03 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 15.3 | 18.86 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 19.13 | 18.67 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 16.67 | 18.65 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 15.3 | 18.6 |
| OQU77422 | Sorghum | cytosol | 14.48 | 18.53 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 17.21 | 18.53 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 18.85 | 18.5 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 16.67 | 18.48 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 18.85 | 18.4 |
| TraesCSU01G045900.1 | Wheat | cytosol | 15.03 | 18.39 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.58 | 18.33 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.13 | 18.32 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.4 | 17.98 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 16.67 | 17.94 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 16.67 | 17.94 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 17.21 | 17.8 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 22.13 | 17.65 |
| AT5G53360.1 | Thale cress | plasma membrane | 11.2 | 17.6 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 17.21 | 17.26 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 17.21 | 17.26 |
| TraesCSU01G021700.1 | Wheat | nucleus | 17.21 | 17.26 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 21.86 | 17.24 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.2 | 16.87 |
| OQU86453 | Sorghum | cytosol | 9.84 | 16.82 |
| EES17731 | Sorghum | nucleus | 15.85 | 16.76 |
| OQU77425 | Sorghum | nucleus | 16.94 | 16.49 |
| TraesCSU01G231400.1 | Wheat | nucleus | 15.3 | 16.18 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 17.21 | 15.56 |
| KXG21322 | Sorghum | nucleus | 15.85 | 15.51 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 14.21 | 15.25 |
| EES17735 | Sorghum | mitochondrion | 18.58 | 15.14 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 11.48 | 14.74 |
| AT3G13672.2 | Thale cress | nucleus | 8.74 | 13.17 |
| EES02574 | Sorghum | nucleus | 14.75 | 12.05 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.82 | 3.03 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:842979 | ProteinID:AAG51177.1 | ProteinID:AEE34535.1 |
| ProteinID:AEE34536.1 | ArrayExpress:AT1G66610 | EnsemblPlantsGene:AT1G66610 | RefSeq:AT1G66610 | TAIR:AT1G66610 | RefSeq:AT1G66610-TAIR-G |
| EnsemblPlants:AT1G66610.1 | TAIR:AT1G66610.1 | Unigene:At.52404 | ncoils:Coil | EMBL:DQ446403 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_001185331.1 |
| RefSeq:NP_176834.1 | PFAM:PF03145 | PO:PO:0000084 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 |
| UniProt:Q9C6H4 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000A0FB5 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H4]
Coordinates
chr1:-:24849716..24851450
Molecular Weight (calculated)
40790.6 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.251
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGTNAEQA LAREEASSSR PKRQRVPSIV EEEGENGGGD VVVRSGTLFE LDLLDCPICC NALTIPIFQC DKGHIACSSC CTNVSNKCPY CSLAIGNYRS
101: RIMERVVEAF IVRCPIVAGE ASSSRQKRLR VPSIDEENGE NGGRDVVVPS GTLSQLDLLD CPVCSKALKI SIFQQSLFLA KRQNGCTETF SYGNELVHEK
201: KCSFALCYCP APNCNYAGVY KDLYSHYAAN HKKLWTRFSC GYSMHVCMDF ESKSLVLQQY SDGPLVVLQC FKEPPQGLFW TVNCIAPSAP GVGKFSYELS
301: YSTAGNTLTF RSSEMNRIQK VSFQTPEKDF MFIPEYILCP MGLYKGTYIC IRSLEEEEEE EEDNED
101: RIMERVVEAF IVRCPIVAGE ASSSRQKRLR VPSIDEENGE NGGRDVVVPS GTLSQLDLLD CPVCSKALKI SIFQQSLFLA KRQNGCTETF SYGNELVHEK
201: KCSFALCYCP APNCNYAGVY KDLYSHYAAN HKKLWTRFSC GYSMHVCMDF ESKSLVLQQY SDGPLVVLQC FKEPPQGLFW TVNCIAPSAP GVGKFSYELS
301: YSTAGNTLTF RSSEMNRIQK VSFQTPEKDF MFIPEYILCP MGLYKGTYIC IRSLEEEEEE EEDNED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.