Factsheet for AT3G58040.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56244	Canola	cytosol	90.58	96.54
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	81.17	96.15
CDY57244	Canola	cytosol	96.1	96.1
CDY06056	Canola	cytosol	81.17	95.42
CDX71977	Canola	cytosol	95.78	95.16
CDY67927	Canola	cytosol	95.78	94.86
CDX88968	Canola	cytosol	95.78	94.86
Bra014589.1-P	Field mustard	nucleus	88.96	93.84
AT2G41980.1	Thale cress	nucleus	92.53	93.44
Bra007376.1-P	Field mustard	cytosol	75.97	84.78
VIT_08s0007g06740.t01	Wine grape	cytosol	82.14	80.32
PGSC0003DMT400060947	Potato	cytosol	61.69	77.55
PGSC0003DMT400060943	Potato	cytosol	61.69	77.55
KRH67087	Soybean	nucleus	81.82	74.56
KRG95412	Soybean	nucleus	81.82	73.68
AT5G53360.1	Thale cress	plasma membrane	54.22	71.67
Solyc10g080570.1.1	Tomato	cytosol	66.56	67.66
AT4G27880.1	Thale cress	nucleus	69.81	65.75
AT3G61790.1	Thale cress	nucleus	69.16	65.34
AT3G13672.2	Thale cress	nucleus	38.31	48.56
AT5G37870.1	Thale cress	nucleus	21.1	23.13
AT5G37910.1	Thale cress	nucleus	20.13	22.46
AT5G37890.1	Thale cress	nucleus	20.45	22.03
AT1G66630.1	Thale cress	cytosol	20.13	20.46
AT5G37930.1	Thale cress	nucleus	21.43	18.91
AT1G66650.1	Thale cress	nucleus	20.13	18.84
AT1G66620.1	Thale cress	nucleus	18.83	18.53
AT5G62800.1	Thale cress	nucleus	20.78	18.39
AT1G66610.1	Thale cress	nucleus	21.75	18.31
AT5G37900.1	Thale cress	nucleus	13.96	17.84
AT1G66660.2	Thale cress	nucleus	18.51	16.38

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:824973	UniProt:A0A178VHN9
ProteinID:AEE79735.1	EMBL:AK229466	ProteinID:ANM64730.1	ProteinID:ANM64731.1	ArrayExpress:AT3G58040	EnsemblPlantsGene:AT3G58040
RefSeq:AT3G58040	TAIR:AT3G58040	RefSeq:AT3G58040-TAIR-G	EnsemblPlants:AT3G58040.3	EMBL:AY087768	EMBL:BT025655
ProteinID:CAB67632.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	GO:GO:2000785
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	RefSeq:NP_001326739.1	RefSeq:NP_001326740.1
RefSeq:NP_191363.1	ProteinID:OAP05927.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF73	UniProt:Q9M2P4	InterPro:SINA-like	Symbol:SINAT2	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI00000A158F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:

Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]

Coordinates

chr3:+:21488462..21491518

Molecular Weight (calculated)

34994.9 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.478

Length

308 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.