CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95412	Soybean	nucleus	97.34	96.2
CDX71977	Canola	cytosol	75.74	82.58
CDY57244	Canola	cytosol	74.85	82.14
CDY56244	Canola	cytosol	70.12	82.01
AT3G58040.3	Thale cress	cytosol	74.56	81.82
CDY67927	Canola	cytosol	74.85	81.35
CDX88968	Canola	cytosol	74.85	81.35
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	62.43	81.15
AT2G41980.1	Thale cress	nucleus	73.08	80.98
CDY06056	Canola	cytosol	62.72	80.92
Bra014589.1-P	Field mustard	nucleus	68.93	79.79
VIT_08s0007g06740.t01	Wine grape	cytosol	73.67	79.05
CDY06889	Canola	cytosol	69.23	78.79
CDY64066	Canola	cytosol	25.15	78.7
Bra008328.1-P	Field mustard	cytosol	24.85	77.78
CDY14808	Canola	cytosol	69.23	77.48
Bra016898.1-P	Field mustard	cytosol	69.23	76.72
CDY35390	Canola	nucleus	69.53	76.55
Bra000249.1-P	Field mustard	nucleus	69.53	76.55
CDY22549	Canola	nucleus	69.82	76.38
PGSC0003DMT400060947	Potato	cytosol	52.96	73.06
PGSC0003DMT400060943	Potato	cytosol	52.96	73.06
Bra007376.1-P	Field mustard	cytosol	58.58	71.74
KRH13409	Soybean	cytosol	62.13	69.08
KRH64440	Soybean	cytosol	64.5	67.49
KRG97189	Soybean	nucleus	61.83	66.56
KRH53502	Soybean	cytosol	64.2	66.36
Solyc10g080570.1.1	Tomato	cytosol	57.99	64.69
CDY67899	Canola	cytosol, plastid	31.66	64.46
KRH68916	Soybean	nucleus	61.83	63.72
CDY14650	Canola	cytosol, nucleus, plastid	39.94	61.09
KRH20763	Soybean	nucleus	62.72	60.74
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	48.52	59.42
CDY38819	Canola	nucleus	31.66	55.15
KRH58384	Soybean	nucleus	19.82	20.94
KRH42263	Soybean	nucleus	19.53	20.62

Protein Annotations

EntrezGene:100500061	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0R0KUN8
EMBL:ACUP02002027	EnsemblPlantsGene:GLYMA_03G146300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
EnsemblPlants:KRH67087	ProteinID:KRH67087	ProteinID:KRH67087.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI0006ED7EB3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:36162918..36166178

Molecular Weight (calculated)

38142.6 Da

IEP (calculated)

8.276

GRAVY (calculated)

-0.428

Length

338 amino acids

Sequence
(BLAST)

001: MHFWDVACHK SRSSCSLSSR KKYCRSGLAM APGSSVFKEV LESHLMSSDY EMGKAKSEAK SNSTSTKSSI GLSGKSGISS NNGVYELLGC PVCKNLMYPP
101: IHQCPNGHTL CSHCKVEVHN ICPSCHHDLG NIRCLALEKV AESLELPCRY QSLGCHDIFP YYTKLKHEQN CGFRPYNCPY AGSECSVMGD IPTLVAHLKD
201: DHKVDMHDGC TFNHRYVKAN PHEVENATWM LTVFNSFGRH FCLHFEAFQL GSAPVYMAFL RFMGDDNEAK KFSYSLEVGA NGRKLIWQGI PRSIRDSHRK
301: VRDSQDGLII QRNLALYFSG GERQELKLRI TGRIWREE

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.