CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53502	Soybean	cytosol	99.07	97.86
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	73.99	93.36
VIT_16s0098g01850.t01	Wine grape	cytosol	89.16	88.07
KRG97189	Soybean	nucleus	80.81	83.12
KRH68916	Soybean	nucleus	79.26	78.05
KRH13409	Soybean	cytosol	68.11	72.37
KRH67087	Soybean	nucleus	67.49	64.5
KRG95412	Soybean	nucleus	67.18	63.45
KRH20763	Soybean	nucleus	68.11	63.04
KRH58384	Soybean	nucleus	21.67	21.88
KRH42263	Soybean	nucleus	20.74	20.94

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:ACUP02002765	EnsemblPlantsGene:GLYMA_04G235700
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	UniProt:I1JYR5	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KRH64440	ProteinID:KRH64440	ProteinID:KRH64440.1	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002339F1F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH

Description

hypothetical protein

Coordinates

chr4:+:50375864..50379558

Molecular Weight (calculated)

36530.4 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.417

Length

323 amino acids

Sequence
(BLAST)

001: MDLMSVECVS SSDGMDEDEI HANHHHSEFS STKPRNGGTS NINSVGPNGI APATSVHELL ECPVCTNSMY PPIHQCHNGH TLCSTCKTRV HNRCPTCRQE
101: LGDIRCLALE KVAESLELPC KYYSLGCPEI FPYYSKLKHE TVCNFRPYSC PYAGSECSVV GDIPFLVAHL RDDHKVDMHT GCTFNHRYVK SNPREVENAT
201: WMLTVFHCFG QYFCLHFEAF QLGMAPVYMA FLRFMGDENE ARNYSYSLEV GANGRKLIWE GTPRSVRDSH RKVRDSHDGL IIQRNMALFF SGGDRKELKL
301: RVTGRIWKEQ NSDAGVCMPN LCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.