CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00424
KRH03382
KRH40763
KRH56999

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	KRH03382	AT1G19010.1	21798944
AT3G61790.1	KRH56999	AT1G19010.1	21798944
AT3G61790.1	KRH00424	AT2G38490.1	21798944
AT3G61790.1	KRH40763	AT2G38490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97189	Soybean	nucleus	91.46	95.54
VIT_02s0025g01660.t01	Wine grape	cytosol	79.27	82.28
KRH64440	Soybean	cytosol	78.05	79.26
KRH53502	Soybean	cytosol	78.35	78.59
Bra003473.1-P	Field mustard	nucleus	75.61	77.99
PGSC0003DMT400048586	Potato	mitochondrion	75.91	77.57
Solyc10g009420.2.1	Tomato	nucleus	74.7	77.53
CDX67865	Canola	nucleus	76.22	77.4
CDY25077	Canola	nucleus	76.22	77.4
CDX92848	Canola	nucleus	71.65	77.05
AT3G61790.1	Thale cress	nucleus	76.22	76.69
PGSC0003DMT400018049	Potato	nucleus	77.44	76.28
Solyc05g050580.2.1	Tomato	nucleus	76.83	76.13
Solyc01g096020.2.1	Tomato	cytosol	77.13	75.98
PGSC0003DMT400000649	Potato	cytosol	77.13	75.3
GSMUA_Achr5P06970_001	Banana	cytosol	74.09	75.0
Bra014421.1-P	Field mustard	cytosol	73.17	75.0
CDY19018	Canola	nucleus	73.17	74.53
CDY43950	Canola	nucleus	73.78	74.46
CDY14268	Canola	nucleus	72.56	74.38
Bra010392.1-P	Field mustard	nucleus	72.56	74.38
CDX89132	Canola	cytosol	73.78	74.23
CDX89221	Canola	nucleus	72.87	74.22
Bra026301.1-P	Field mustard	nucleus	72.87	74.22
AT4G27880.1	Thale cress	nucleus	73.78	74.01
CDX97399	Canola	nucleus	71.95	73.52
KRH13409	Soybean	cytosol	65.55	70.72
KRH20763	Soybean	nucleus	65.85	61.89
KRH67087	Soybean	nucleus	63.72	61.83
KRG95412	Soybean	nucleus	63.41	60.82
VIT_15s0046g00400.t01	Wine grape	cytosol	46.65	56.67
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.55	55.19
VIT_15s0046g00390.t01	Wine grape	nucleus	43.6	53.16
VIT_15s0046g00410.t01	Wine grape	cytosol	27.13	49.17
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	15.55	48.11
VIT_00s0726g00020.t01	Wine grape	extracellular	16.77	47.83
VIT_15s0046g00380.t01	Wine grape	cytosol	36.28	47.79
KRH58384	Soybean	nucleus	20.12	20.62
KRH42263	Soybean	nucleus	19.21	19.69

Protein Annotations

EntrezGene:100782764	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:ACUP02002127
EnsemblPlantsGene:GLYMA_03G257700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	UniProt:K7KH35	EnsemblPlants:KRH68916	ProteinID:KRH68916	ProteinID:KRH68916.1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000296DF22	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:45212082..45218840

Molecular Weight (calculated)

37353.4 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.442

Length

328 amino acids

Sequence
(BLAST)

001: MESSSIESST VSSMTMMEED EHPHHQFSSI SKLHNSGPTT TSVHDLLECP VCTNSMYPPI HQCHNGHTLC STCKTRVHNR CPTCRQELGD IRCLALEKIA
101: ESLELPCRYI SLGCPEIFPY YSKLKHEAIC NFRPYNCPYA GSDCSVVGDI PCLVAHLRDD HRVDMHSGCT FNHRYVKSNP MEVENATWML TVFHCFGQYF
201: CLHFEAFQLG MAPVYMAFLR FMGDEREARN YSYSLEVGGN GRKLTFEGSP RSIRDSHKKV RDSHDGLIIY RNMALFFSGG DRKELKLRVT GRIWKEQQNP
301: EVSEPDQVPN GSESMVNNSE IASLYLLN

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.