Factsheet for Bra003473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000066.1-P
Bra005103.1-P
Bra016529.1-P
Bra028184.1-P
Bra028408.1-P
Bra029230.1-P
Bra036350.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	Bra016529.1-P	AT1G19010.1	21798944
AT3G61790.1	Bra000066.1-P	AT2G38490.1	21798944
AT3G61790.1	Bra005103.1-P	AT2G38490.1	21798944
AT3G61790.1	Bra036350.1-P	AT3G26050.1	21798944
AT3G61790.1	Bra028184.1-P	AT5G38470.1	21798944
AT3G61790.1	Bra028408.1-P	AT5G38470.1	21798944
AT3G61790.1	Bra029230.1-P	AT5G63370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67865	Canola	nucleus	99.69	98.14
CDY25077	Canola	nucleus	99.37	97.83
AT3G61790.1	Thale cress	nucleus	96.23	93.86
Bra014421.1-P	Field mustard	cytosol	91.82	91.25
VIT_02s0025g01660.t01	Wine grape	cytosol	81.76	82.28
KRG97189	Soybean	nucleus	79.56	80.57
GSMUA_Achr5P06970_001	Banana	cytosol	79.87	78.4
Bra010392.1-P	Field mustard	nucleus	77.99	77.5
Bra026301.1-P	Field mustard	nucleus	77.67	76.71
KRH68916	Soybean	nucleus	77.99	75.61
Bra008328.1-P	Field mustard	cytosol	23.9	70.37
Bra016898.1-P	Field mustard	cytosol	64.47	67.21
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	54.72	66.92
Bra000249.1-P	Field mustard	nucleus	64.47	66.78
Bra014589.1-P	Field mustard	nucleus	60.69	66.1
Bra007376.1-P	Field mustard	cytosol	50.94	58.7
VIT_15s0046g00400.t01	Wine grape	cytosol	47.8	56.3
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.88	53.94
VIT_15s0046g00390.t01	Wine grape	nucleus	44.34	52.42
VIT_15s0046g00410.t01	Wine grape	cytosol	29.56	51.93
Bra001519.1-P	Field mustard	nucleus	34.59	51.4
VIT_00s0726g00020.t01	Wine grape	extracellular	16.35	45.22
VIT_15s0046g00380.t01	Wine grape	cytosol	35.22	44.98
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.78	44.34
Bra018266.1-P	Field mustard	plastid	21.07	23.18
Bra025434.1-P	Field mustard	nucleus	20.44	22.89
Bra012354.1-P	Field mustard	cytosol	18.24	21.32
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.61	20.82
Bra000425.1-P	Field mustard	nucleus	17.92	20.14
Bra028395.1-P	Field mustard	nucleus	20.13	19.75
Bra022858.1-P	Field mustard	nucleus	18.87	19.74
Bra004176.1-P	Field mustard	nucleus	20.44	19.29
Bra004402.1-P	Field mustard	nucleus	17.3	17.35
Bra004174.1-P	Field mustard	nucleus	18.87	17.0
Bra019710.1-P	Field mustard	nucleus	16.67	15.5

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra003473	EnsemblPlants:Bra003473.1
EnsemblPlants:Bra003473.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M4CGZ0
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00025418CD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

AT3G61790 (E=6e-172) | seven in absentia (SINA) family protein

Coordinates

chrA07:-:13374727..13376396

Molecular Weight (calculated)

36052.8 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.472

Length

318 amino acids

Sequence
(BLAST)

001: MDCASTIDVT DDEEIHQDRH SYASVSKHHS NNSNANAAPG LLPTTTSVHE LLECPVCTNS MYPPIHQCHN GHTLCSTCKN RVHNRCPTCR QELGDIRCLA
101: LEKVAESLEL PCKYMSLGCP EIFPYYSKLK HETVCNFRPY NCPYAGSECS VMGDIPFLVA HLRDDHKVDM HSGCTFNHRY VKSNPREVEN ATWMLTVFHC
201: FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE TEARNYNYSL EVGGYGRKLI WEGTPRSVRD SHRKVRDSHD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQQQSGEGGG GACIPNLS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.