Factsheet for Bra014421.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000066.1-P
Bra005103.1-P
Bra016529.1-P
Bra028184.1-P
Bra028408.1-P
Bra029230.1-P
Bra036350.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61790.1	Bra016529.1-P	AT1G19010.1	21798944
AT3G61790.1	Bra000066.1-P	AT2G38490.1	21798944
AT3G61790.1	Bra005103.1-P	AT2G38490.1	21798944
AT3G61790.1	Bra036350.1-P	AT3G26050.1	21798944
AT3G61790.1	Bra028184.1-P	AT5G38470.1	21798944
AT3G61790.1	Bra028408.1-P	AT5G38470.1	21798944
AT3G61790.1	Bra029230.1-P	AT5G63370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89132	Canola	cytosol	96.88	95.09
Bra003473.1-P	Field mustard	nucleus	91.25	91.82
AT3G61790.1	Thale cress	nucleus	92.81	91.1
VIT_02s0025g01660.t01	Wine grape	cytosol	78.44	79.43
KRG97189	Soybean	nucleus	75.31	76.75
GSMUA_Achr5P06970_001	Banana	cytosol	76.88	75.93
Bra010392.1-P	Field mustard	nucleus	74.69	74.69
Bra026301.1-P	Field mustard	nucleus	75.0	74.53
KRH68916	Soybean	nucleus	75.0	73.17
Bra008328.1-P	Field mustard	cytosol	23.75	70.37
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	54.69	67.31
Bra000249.1-P	Field mustard	nucleus	63.75	66.45
Bra014589.1-P	Field mustard	nucleus	60.62	66.44
Bra016898.1-P	Field mustard	cytosol	63.12	66.23
Bra007376.1-P	Field mustard	cytosol	51.25	59.42
VIT_15s0046g00400.t01	Wine grape	cytosol	46.25	54.81
VIT_00s0426g00040.t01	Wine grape	mitochondrion	40.0	53.11
VIT_15s0046g00390.t01	Wine grape	nucleus	43.44	51.67
Bra001519.1-P	Field mustard	nucleus	34.38	51.4
VIT_15s0046g00410.t01	Wine grape	cytosol	29.06	51.38
VIT_00s0663g00030.t01	Wine grape	cytosol, extracellular, nucleus	14.69	44.34
VIT_15s0046g00380.t01	Wine grape	cytosol	34.38	44.18
VIT_00s0726g00020.t01	Wine grape	extracellular	15.62	43.48
Bra025434.1-P	Field mustard	nucleus	21.25	23.94
Bra018266.1-P	Field mustard	plastid	21.25	23.53
Bra012354.1-P	Field mustard	cytosol	18.75	22.06
Bra028395.1-P	Field mustard	nucleus	20.94	20.68
Bra000425.1-P	Field mustard	nucleus	18.12	20.49
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.19	20.45
Bra022858.1-P	Field mustard	nucleus	19.06	20.07
Bra004176.1-P	Field mustard	nucleus	20.0	18.99
Bra004402.1-P	Field mustard	nucleus	16.56	16.72
Bra004174.1-P	Field mustard	nucleus	17.81	16.15
Bra019710.1-P	Field mustard	nucleus	17.19	16.08

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra014421	EnsemblPlants:Bra014421.1
EnsemblPlants:Bra014421.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M4DD53
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002543837	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

AT3G61790 (E=1e-175) | seven in absentia (SINA) family protein

Coordinates

chrA04:+:548437..550132

Molecular Weight (calculated)

36751.6 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.508

Length

320 amino acids

Sequence
(BLAST)

001: MDLDSMDCTS TIDVTDDDEE IHQDRHSYAS VSKHHSNNST NANAASGLLP TTTSVHELLE CPVCTNSMYP PIHQCQNGHT LCSTCKNRVH NRCPTCRQEL
101: GDIRCLALEK VAESLELPCK YMSLGCPEIF PYYGKPKHET VCDFRPYSCP YAGSECSVMG DIPFLVAHLR DDHKVDMHSG CTFNHRYVKS NPREVENATW
201: MLTVFYCFGE YFCLHFEAFQ LGMAPVYMAF LRFMGDETEA RNYNYSLEVG GYGRKLIWEG TPRSVRDSHR KVRDSHDGLI IQRNMALFFS GGDRKELKLR
301: VTGRIWKEQQ HLGFKWRMAR

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.