Factsheet for Bra007376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06056	Canola	cytosol	86.96	91.6
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	85.14	90.38
Bra008328.1-P	Field mustard	cytosol	33.7	86.11
Bra014589.1-P	Field mustard	nucleus	84.06	79.45
CDX71977	Canola	cytosol	85.87	76.45
AT3G58040.3	Thale cress	cytosol	84.78	75.97
Bra016898.1-P	Field mustard	cytosol	75.0	67.87
Bra000249.1-P	Field mustard	nucleus	73.19	65.8
VIT_08s0007g06740.t01	Wine grape	cytosol	71.74	62.86
KRH67087	Soybean	nucleus	71.74	58.58
KRG95412	Soybean	nucleus	71.74	57.89
PGSC0003DMT400060947	Potato	cytosol	49.64	55.92
PGSC0003DMT400060943	Potato	cytosol	49.64	55.92
Bra026301.1-P	Field mustard	nucleus	60.51	51.86
Bra010392.1-P	Field mustard	nucleus	59.78	51.56
Bra014421.1-P	Field mustard	cytosol	59.42	51.25
Bra003473.1-P	Field mustard	nucleus	58.7	50.94
Solyc10g080570.1.1	Tomato	cytosol	55.8	50.83
Bra001519.1-P	Field mustard	nucleus	38.41	49.53
Bra000425.1-P	Field mustard	nucleus	16.3	15.9
Bra025434.1-P	Field mustard	nucleus	16.3	15.85
Bra018266.1-P	Field mustard	plastid	15.94	15.22
Bra022858.1-P	Field mustard	nucleus	16.3	14.8
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.77	14.13
Bra012354.1-P	Field mustard	cytosol	13.41	13.6
Bra028395.1-P	Field mustard	nucleus	15.94	13.58
Bra004176.1-P	Field mustard	nucleus	14.13	11.57
Bra004402.1-P	Field mustard	nucleus	12.32	10.73
Bra004174.1-P	Field mustard	nucleus	13.41	10.48
Bra019710.1-P	Field mustard	nucleus	12.32	9.94

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra007376	EnsemblPlants:Bra007376.1
EnsemblPlants:Bra007376.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013083	UniProt:M4CT34
PFAM:PF03145	PFscan:PS50089	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	TMHMM:TMhelix	InterPro:TRAF-like	UniParc:UPI0002542DC4	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G58040 (E=4e-082) SINAT2 | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA09:+:28887028..28888612

Molecular Weight (calculated)

30891.3 Da

IEP (calculated)

8.410

GRAVY (calculated)

-0.292

Length

276 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VLESTSTGMD YEVKMAKVES NNTNNKPTKS SSAGVGKYGM HSNNGVYELL ECPVCTNLMY PPIHQCPNGH TLCSNCKARV QNTCPTCRYE
101: LASLNTSSTA GLGLTLALML ALSVLLLVIS PRLLFLKDDH KVDMHDGCTF NHRYVKSNPH EVENATWMLT VFNCFGRQFC LHFEAFQLGM APVYMAFLRF
201: MGDENEAKKF SYSLEVGAHG RKLTWQGIPR SIRDSHRKVR DSQDGLIIPR NLALYFSGGD RQELKLRVTG RIWKEE

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.