Factsheet for Bra014589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88968	Canola	cytosol	98.97	92.93
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	82.19	92.31
AT3G58040.3	Thale cress	cytosol	93.84	88.96
Bra007376.1-P	Field mustard	cytosol	79.45	84.06
Bra008328.1-P	Field mustard	cytosol	30.82	83.33
Bra016898.1-P	Field mustard	cytosol	82.19	78.69
Bra000249.1-P	Field mustard	nucleus	80.82	76.87
VIT_08s0007g06740.t01	Wine grape	cytosol	79.11	73.33
PGSC0003DMT400060947	Potato	cytosol	58.56	69.8
PGSC0003DMT400060943	Potato	cytosol	58.56	69.8
KRH67087	Soybean	nucleus	79.79	68.93
KRG95412	Soybean	nucleus	79.45	67.84
Bra026301.1-P	Field mustard	nucleus	69.18	62.73
Bra010392.1-P	Field mustard	nucleus	68.15	62.19
Solyc10g080570.1.1	Tomato	cytosol	64.04	61.72
Bra003473.1-P	Field mustard	nucleus	66.1	60.69
Bra014421.1-P	Field mustard	cytosol	66.44	60.62
Bra001519.1-P	Field mustard	nucleus	40.41	55.14
Bra018266.1-P	Field mustard	plastid	21.23	21.45
Bra025434.1-P	Field mustard	nucleus	20.21	20.77
Bra000425.1-P	Field mustard	nucleus	19.18	19.79
Bra022858.1-P	Field mustard	nucleus	19.52	18.75
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.12	18.59
Bra028395.1-P	Field mustard	nucleus	20.55	18.52
Bra012354.1-P	Field mustard	cytosol	17.12	18.38
Bra004176.1-P	Field mustard	nucleus	17.47	15.13
Bra004402.1-P	Field mustard	nucleus	16.1	14.83
Bra004174.1-P	Field mustard	nucleus	17.47	14.45
Bra019710.1-P	Field mustard	nucleus	16.1	13.74

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra014589	EnsemblPlants:Bra014589.1
EnsemblPlants:Bra014589.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:M4DDM1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00025441DE	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

AT3G58040 (E=3e-103) SINAT2 | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2); protein binding / ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA04:-:1633535..1635205

Molecular Weight (calculated)

32944.3 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.513

Length

292 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VLESNSTGMD YEVKTTKVEV SNSNNSKSTK SGGAGTGKYG MHSNNGVYEL LECPVCTNLM YPPIHQCPNG HTLCSNCKAR VQNTCPTCRY
101: ELGNIRCLAL EKVADSFKLK HEQHCRFRPY ACPYAGSECL VTGDISTLVV HLKDDHKVDM HDGCTFNHRY VKSNPHEVEN ATWMLTVFNC FGRQFCLHFE
201: AFQLGMAPVY MAFLRFMGDE NEAKKFSYSL EVGAHGRKRT WQGIPRSIRD SHRKVRDSQD GLIIPRNLAL YFSGGDRQEL KLRVTGRIWK EE

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.