Factsheet for Bra001519.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82523	Canola	cytosol	96.26	96.26
CDX75727	Canola	cytosol	96.26	96.26
AT3G13672.2	Thale cress	nucleus	78.04	68.72
Bra008328.1-P	Field mustard	cytosol	27.1	53.7
Bra014589.1-P	Field mustard	nucleus	55.14	40.41
Bra003315.1-P	Field mustard	cytosol, nucleus, plastid	49.07	40.38
Solyc01g006190.2.1	Tomato	cytosol	56.07	38.96
PGSC0003DMT400081996	Potato	cytosol	56.07	38.96
VIT_06s0004g01130.t01	Wine grape	cytosol	55.61	38.64
Bra007376.1-P	Field mustard	cytosol	49.53	38.41
PGSC0003DMT400010948	Potato	cytosol	55.14	38.06
Bra000249.1-P	Field mustard	nucleus	54.21	37.78
Bra016898.1-P	Field mustard	cytosol	53.27	37.38
Bra010392.1-P	Field mustard	nucleus	52.34	35.0
Bra026301.1-P	Field mustard	nucleus	52.34	34.78
Bra003473.1-P	Field mustard	nucleus	51.4	34.59
Bra014421.1-P	Field mustard	cytosol	51.4	34.38
Bra018266.1-P	Field mustard	plastid	17.29	12.8
Bra025434.1-P	Field mustard	nucleus	16.36	12.32
Bra022858.1-P	Field mustard	nucleus	16.36	11.51
Bra004401.1-P	Field mustard	cytosol, mitochondrion, nucleus	13.55	10.78
Bra028395.1-P	Field mustard	nucleus	15.42	10.19
Bra012354.1-P	Field mustard	cytosol	12.15	9.56
Bra000425.1-P	Field mustard	nucleus	12.15	9.19
Bra004402.1-P	Field mustard	nucleus	13.55	9.15
Bra004176.1-P	Field mustard	nucleus	13.55	8.61
Bra004174.1-P	Field mustard	nucleus	13.08	7.93
Bra019710.1-P	Field mustard	nucleus	10.28	6.43

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	InterPro:7-in-absentia-prot_TRAF-dom	EnsemblPlantsGene:Bra001519	EnsemblPlants:Bra001519.1	EnsemblPlants:Bra001519.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974
UniProt:M4CBD9	PFAM:PF03145	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI00025408F7	:	:	:	:

Description

AT3G13672 (E=2e-099) | seven in absentia (SINA) family protein

Coordinates

chrA03:-:16812374..16813156

Molecular Weight (calculated)

25051.5 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.719

Length

214 amino acids

Sequence
(BLAST)

001: MEPRINHLQI ESQVHELLDY PVCTNQITST IYQCSNDYTG EVNNDKENPY NCPYSGSKCT ATGDTQWLLQ HLRNDHHVEM HDGRSFSHRY VHHNPKHLHH
101: ATWMLTLLDC YGRQFCLYFE AFHLKKTPMY IAYMQFMGDE EEATSFSYTL EISGNGRKMT WQGVPRSIRD SHKTVRDSQD GLIITRKLAL YFSADNSNSK
201: ELKLKISGCV WREH

Best Arabidopsis Sequence Match ( AT3G13672.1 )
(BLAST)

001: MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW
101: MLTLLDCCGR KFCLYFEAFH LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI ITRKLALFFS TDNNTTDKEL
201: KLKVSGRVWR EQPVSI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4JDF6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.