Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82523 | Canola | cytosol | 97.66 | 97.66 |
| Bra001519.1-P | Field mustard | nucleus | 96.26 | 96.26 |
| AT3G13672.2 | Thale cress | nucleus | 78.97 | 69.55 |
| CDY64066 | Canola | cytosol | 28.04 | 55.56 |
| CDY67899 | Canola | cytosol, plastid | 32.71 | 42.17 |
| CDY56244 | Canola | cytosol | 55.61 | 41.18 |
| CDY06056 | Canola | cytosol | 49.07 | 40.08 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 57.01 | 39.61 |
| Solyc01g006190.2.1 | Tomato | cytosol | 57.01 | 39.61 |
| PGSC0003DMT400081996 | Potato | cytosol | 57.01 | 39.61 |
| CDY38819 | Canola | nucleus | 35.51 | 39.18 |
| CDY06889 | Canola | cytosol | 54.21 | 39.06 |
| PGSC0003DMT400010948 | Potato | cytosol | 56.07 | 38.71 |
| CDY57244 | Canola | cytosol | 55.61 | 38.64 |
| CDY35390 | Canola | nucleus | 55.14 | 38.44 |
| CDX88968 | Canola | cytosol | 55.61 | 38.26 |
| CDY67927 | Canola | cytosol | 55.61 | 38.26 |
| CDX71977 | Canola | cytosol | 55.14 | 38.06 |
| CDY22549 | Canola | nucleus | 54.67 | 37.86 |
| CDY14808 | Canola | cytosol | 53.27 | 37.75 |
| CDX92848 | Canola | nucleus | 51.87 | 36.39 |
| CDX97399 | Canola | nucleus | 54.21 | 36.14 |
| CDY19018 | Canola | nucleus | 53.74 | 35.71 |
| CDY14268 | Canola | nucleus | 53.27 | 35.62 |
| CDX89221 | Canola | nucleus | 53.27 | 35.4 |
| CDX67865 | Canola | nucleus | 53.27 | 35.29 |
| CDY25077 | Canola | nucleus | 53.27 | 35.29 |
| CDX89132 | Canola | cytosol | 52.8 | 34.66 |
| CDY43950 | Canola | nucleus | 51.87 | 34.15 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 34.58 | 26.81 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 26.17 | 25.34 |
| CDY01757 | Canola | cytosol | 4.21 | 16.98 |
| CDY10787 | Canola | plastid | 18.22 | 13.49 |
| CDY01699 | Canola | nucleus, plastid | 17.29 | 13.12 |
| CDX99687 | Canola | nucleus | 17.29 | 13.07 |
| CDY52473 | Canola | nucleus | 17.29 | 13.03 |
| CDY11709 | Canola | nucleus | 9.35 | 12.12 |
| CDY27008 | Canola | nucleus | 16.36 | 10.64 |
| CDY47873 | Canola | nucleus | 15.89 | 10.49 |
| CDY01695 | Canola | nucleus | 14.95 | 10.36 |
| CDY12498 | Canola | nucleus | 13.08 | 10.29 |
| CDY25763 | Canola | nucleus | 12.62 | 9.93 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 13.55 | 9.76 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 13.08 | 9.52 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 7.94 | 9.5 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 14.02 | 8.6 |
| CDY36211 | Canola | nucleus | 14.49 | 8.59 |
| CDY36209 | Canola | plastid | 8.41 | 8.53 |
| CDX96138 | Canola | nucleus | 13.55 | 8.53 |
| CDY67278 | Canola | cytosol | 2.8 | 7.41 |
| CDY70665 | Canola | nucleus | 10.75 | 7.1 |
| CDY01758 | Canola | cytosol | 7.01 | 3.43 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078CG09 | EnsemblPlants:CDX75727 | ProteinID:CDX75727 | ProteinID:CDX75727.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00123645001 | InterPro:IPR008974 | PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE17D3 | : | : |
Description
BnaC03g38100D
Coordinates
chrLK031805:-:206769..207696
Molecular Weight (calculated)
25188.8 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.721
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRINHLQI ESQVHELLDY PVCTNQITST IYQCSNDYTG EVNNDKEKPY NCPYSGSKCT ATGDIRWLLQ HLRNDHHVEM HDGRSFSHRY VHHNPKHLHH
101: ATWMLTLLDC YGRQFCLYFE AFHLKKTPMY IAYMQFMGDE EEATSFSYTL EISGNGRKMT WQGVPRSIRD SHKTVRDSQD GLIITRKLAM FFSADNTNSK
201: ELKLKISGRI WREH
101: ATWMLTLLDC YGRQFCLYFE AFHLKKTPMY IAYMQFMGDE EEATSFSYTL EISGNGRKMT WQGVPRSIRD SHKTVRDSQD GLIITRKLAM FFSADNTNSK
201: ELKLKISGRI WREH
001: MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW
101: MLTLLDCCGR KFCLYFEAFH LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI ITRKLALFFS TDNNTTDKEL
201: KLKVSGRVWR EQPVSI
101: MLTLLDCCGR KFCLYFEAFH LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI ITRKLALFFS TDNNTTDKEL
201: KLKVSGRVWR EQPVSI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4JDF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.