CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56244	Canola	cytosol	93.51	99.65
CDY06056	Canola	cytosol	83.12	97.71
CDX71977	Canola	cytosol	98.05	97.42
AT3G58040.3	Thale cress	cytosol	96.1	96.1
CDY67927	Canola	cytosol	96.75	95.82
CDX88968	Canola	cytosol	96.43	95.5
CDY06889	Canola	cytosol	86.04	89.23
CDY14808	Canola	cytosol	86.36	88.08
CDY22549	Canola	nucleus	86.69	86.41
CDY64066	Canola	cytosol	30.19	86.11
CDY35390	Canola	nucleus	84.42	84.69
VIT_08s0007g06740.t01	Wine grape	cytosol	82.79	80.95
PGSC0003DMT400060947	Potato	cytosol	61.04	76.73
PGSC0003DMT400060943	Potato	cytosol	61.04	76.73
KRH67087	Soybean	nucleus	82.14	74.85
KRG95412	Soybean	nucleus	82.14	73.98
CDY67278	Canola	cytosol	18.18	69.14
CDX92848	Canola	nucleus	67.86	68.52
CDY67899	Canola	cytosol, plastid	36.69	68.07
Solyc10g080570.1.1	Tomato	cytosol	66.23	67.33
CDX89221	Canola	nucleus	69.81	66.77
CDY19018	Canola	nucleus	69.81	66.77
CDY14268	Canola	nucleus	69.16	66.56
CDX67865	Canola	nucleus	69.48	66.25
CDY25077	Canola	nucleus	69.48	66.25
CDX97399	Canola	nucleus	68.51	65.73
CDY14650	Canola	cytosol, nucleus, plastid	46.75	65.16
CDX89132	Canola	cytosol	68.18	64.42
CDY43950	Canola	nucleus	67.86	64.31
CDY67900	Canola	cytosol, endoplasmic reticulum, plastid	57.14	63.77
CDY38819	Canola	nucleus	37.01	58.76
CDX75727	Canola	cytosol	38.64	55.61
CDX82523	Canola	cytosol	37.66	54.21
CDY11709	Canola	nucleus	15.58	29.09
CDY10787	Canola	plastid	22.08	23.53
CDY01699	Canola	nucleus, plastid	21.43	23.4
CDX99687	Canola	nucleus	21.1	22.97
CDY52473	Canola	nucleus	21.1	22.89
CDY01695	Canola	nucleus	21.75	21.68
CDY25763	Canola	nucleus	18.83	21.32
CDY27008	Canola	nucleus	22.4	20.97
CDY12498	Canola	nucleus	18.51	20.96
CDY36209	Canola	plastid	14.29	20.85
CDY47873	Canola	nucleus	21.75	20.68
CDY01756	Canola	cytosol, nucleus, plastid	18.18	18.86
CDX83363	Canola	cytosol, nucleus, plasma membrane	10.71	18.44
CDX95911	Canola	cytosol, nucleus, plastid	17.53	18.37
CDX96138	Canola	nucleus	19.48	17.65
CDX96140	Canola	cytosol, nucleus, plastid	19.81	17.48
CDY36211	Canola	nucleus	20.45	17.45
CDY70665	Canola	nucleus	16.56	15.74
CDY01757	Canola	cytosol	2.27	13.21
CDY01758	Canola	cytosol	13.31	9.38

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10
InterPro:7-in-absentia-prot_TRAF-dom	GO:A0A078J3U5	UniProt:A0A078J3U5	EnsemblPlants:CDY57244	ProteinID:CDY57244	ProteinID:CDY57244.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00020723001	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EC3AC4	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

BnaCnng31730DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078J3U5]

Coordinates

chrLK033558:-:26243..29074

Molecular Weight (calculated)

34900.8 Da

IEP (calculated)

8.032

GRAVY (calculated)

-0.464

Length

308 amino acids

Sequence
(BLAST)

001: MAPGGSALKE VLESTSTGMD YEVKMAKAEV NNNKPTKSGS AGVGKYGMHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKARVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QSLGCHDIFP YYSKLKHEQH CRFRPYACPY AGSECSVTGD IHTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.