Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64066 | Canola | cytosol | 35.88 | 87.04 |
| Bra007376.1-P | Field mustard | cytosol | 91.6 | 86.96 |
| CDY56244 | Canola | cytosol | 95.42 | 86.51 |
| CDY57244 | Canola | cytosol | 97.71 | 83.12 |
| CDX71977 | Canola | cytosol | 96.56 | 81.61 |
| AT3G58040.3 | Thale cress | cytosol | 95.42 | 81.17 |
| CDY67927 | Canola | cytosol | 95.42 | 80.39 |
| CDX88968 | Canola | cytosol | 95.42 | 80.39 |
| CDY06889 | Canola | cytosol | 84.73 | 74.75 |
| CDY14808 | Canola | cytosol | 84.35 | 73.18 |
| CDY22549 | Canola | nucleus | 85.11 | 72.17 |
| CDY35390 | Canola | nucleus | 83.21 | 71.01 |
| CDY67899 | Canola | cytosol, plastid | 43.13 | 68.07 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 80.92 | 67.3 |
| KRH67087 | Soybean | nucleus | 80.92 | 62.72 |
| PGSC0003DMT400060947 | Potato | cytosol | 58.4 | 62.45 |
| PGSC0003DMT400060943 | Potato | cytosol | 58.4 | 62.45 |
| KRG95412 | Soybean | nucleus | 80.92 | 61.99 |
| CDX92848 | Canola | nucleus | 66.41 | 57.05 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 48.09 | 57.01 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 59.92 | 56.88 |
| CDY38819 | Canola | nucleus | 41.6 | 56.19 |
| Solyc10g080570.1.1 | Tomato | cytosol | 64.5 | 55.78 |
| CDY14268 | Canola | nucleus | 67.56 | 55.31 |
| CDY19018 | Canola | nucleus | 67.94 | 55.28 |
| CDX89221 | Canola | nucleus | 67.94 | 55.28 |
| CDX97399 | Canola | nucleus | 67.18 | 54.83 |
| CDY25077 | Canola | nucleus | 67.18 | 54.49 |
| CDX67865 | Canola | nucleus | 67.18 | 54.49 |
| CDY43950 | Canola | nucleus | 66.79 | 53.85 |
| CDX89132 | Canola | cytosol | 66.79 | 53.68 |
| CDY67278 | Canola | cytosol | 16.03 | 51.85 |
| CDX75727 | Canola | cytosol | 40.08 | 49.07 |
| CDX82523 | Canola | cytosol | 39.31 | 48.13 |
| CDY11709 | Canola | nucleus | 13.36 | 21.21 |
| CDX99687 | Canola | nucleus | 20.23 | 18.73 |
| CDY52473 | Canola | nucleus | 20.23 | 18.66 |
| CDY01699 | Canola | nucleus, plastid | 18.7 | 17.38 |
| CDY10787 | Canola | plastid | 19.08 | 17.3 |
| CDY01695 | Canola | nucleus | 19.85 | 16.83 |
| CDY27008 | Canola | nucleus | 20.61 | 16.41 |
| CDY25763 | Canola | nucleus | 16.79 | 16.18 |
| CDY12498 | Canola | nucleus | 16.79 | 16.18 |
| CDY47873 | Canola | nucleus | 19.85 | 16.05 |
| CDY36209 | Canola | plastid | 11.83 | 14.69 |
| CDX96138 | Canola | nucleus | 18.7 | 14.41 |
| CDY36211 | Canola | nucleus | 19.08 | 13.85 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 15.65 | 13.8 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 14.89 | 13.27 |
| CDY01757 | Canola | cytosol | 2.67 | 13.21 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 17.18 | 12.89 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 8.02 | 11.73 |
| CDY70665 | Canola | nucleus | 14.5 | 11.73 |
| CDY01758 | Canola | cytosol | 13.36 | 8.01 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 |
| InterPro:7-in-absentia-prot_TRAF-dom | GO:A0A078EY30 | EnsemblPlants:CDY06056 | ProteinID:CDY06056 | ProteinID:CDY06056.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00121916001 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 |
| InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EF1BC0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA09g37240D
Coordinates
chrLK031967:-:518901..521884
Molecular Weight (calculated)
29670.5 Da
IEP (calculated)
8.165
GRAVY (calculated)
-0.519
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGGSALKE VLESTSTGMD YEVKMAKVES NNTNNKPTKS SSAGVGKYGM HSNNGVYELL ECPVCTNLMY PPIHQCPNGH TLCSNCKARV QNTCPTCRYE
101: LGNIRCLALE KVAESLEVPC RYQNDHKVDM HDGCTFNHRY VKSNPHEVEN ATWMLTVFNC FGRQFCLHFE AFQLGMAPVY MAFLRFMGDE NEAKKFSYSL
201: EVGAHGRKLT WQGIPRSIRD SHRKVRDSQD GLIIPRNLAL YFSGGDRQEL KLRVTGRIWK EE
101: LGNIRCLALE KVAESLEVPC RYQNDHKVDM HDGCTFNHRY VKSNPHEVEN ATWMLTVFNC FGRQFCLHFE AFQLGMAPVY MAFLRFMGDE NEAKKFSYSL
201: EVGAHGRKLT WQGIPRSIRD SHRKVRDSQD GLIIPRNLAL YFSGGDRQEL KLRVTGRIWK EE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.