Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64066 | Canola | cytosol | 48.45 | 87.04 |
| CDY67899 | Canola | cytosol, plastid | 53.61 | 62.65 |
| CDY06056 | Canola | cytosol | 56.19 | 41.6 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 57.73 | 40.58 |
| CDY06889 | Canola | cytosol | 60.82 | 39.73 |
| CDY22549 | Canola | nucleus | 62.37 | 39.16 |
| CDY56244 | Canola | cytosol | 58.25 | 39.1 |
| CDY35390 | Canola | nucleus | 61.86 | 39.09 |
| CDY14808 | Canola | cytosol | 60.31 | 38.74 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 42.27 | 37.1 |
| CDY57244 | Canola | cytosol | 58.76 | 37.01 |
| CDX88968 | Canola | cytosol | 58.76 | 36.66 |
| CDX71977 | Canola | cytosol | 58.25 | 36.45 |
| CDY67927 | Canola | cytosol | 58.25 | 36.33 |
| PGSC0003DMT400060947 | Potato | cytosol | 45.88 | 36.33 |
| PGSC0003DMT400060943 | Potato | cytosol | 45.88 | 36.33 |
| CDX75727 | Canola | cytosol | 39.18 | 35.51 |
| CDX82523 | Canola | cytosol | 39.18 | 35.51 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 56.7 | 34.92 |
| CDX92848 | Canola | nucleus | 51.03 | 32.46 |
| CDX67865 | Canola | nucleus | 53.61 | 32.2 |
| CDY25077 | Canola | nucleus | 53.61 | 32.2 |
| CDY43950 | Canola | nucleus | 53.09 | 31.69 |
| CDX89221 | Canola | nucleus | 52.58 | 31.68 |
| CDY19018 | Canola | nucleus | 52.58 | 31.68 |
| KRH67087 | Soybean | nucleus | 55.15 | 31.66 |
| CDY14268 | Canola | nucleus | 52.06 | 31.56 |
| CDX97399 | Canola | nucleus | 52.06 | 31.46 |
| Solyc10g080570.1.1 | Tomato | cytosol | 48.97 | 31.35 |
| CDX89132 | Canola | cytosol | 52.58 | 31.29 |
| KRG95412 | Soybean | nucleus | 55.15 | 31.29 |
| CDY01757 | Canola | cytosol | 3.61 | 13.21 |
| CDY67278 | Canola | cytosol | 4.64 | 11.11 |
| CDY52473 | Canola | nucleus | 14.95 | 10.21 |
| CDY10787 | Canola | plastid | 14.95 | 10.03 |
| CDX99687 | Canola | nucleus | 14.43 | 9.89 |
| CDY11709 | Canola | nucleus | 8.25 | 9.7 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 8.76 | 9.5 |
| CDY01699 | Canola | nucleus, plastid | 13.4 | 9.22 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 12.89 | 8.5 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 14.95 | 8.31 |
| CDY25763 | Canola | nucleus | 11.34 | 8.09 |
| CDY12498 | Canola | nucleus | 11.34 | 8.09 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 12.37 | 8.08 |
| CDY36209 | Canola | plastid | 7.73 | 7.11 |
| CDY27008 | Canola | nucleus | 11.86 | 6.99 |
| CDY47873 | Canola | nucleus | 11.34 | 6.79 |
| CDX96138 | Canola | nucleus | 11.86 | 6.76 |
| CDY36211 | Canola | nucleus | 11.86 | 6.37 |
| CDY70665 | Canola | nucleus | 9.79 | 5.86 |
| CDY01695 | Canola | nucleus | 9.28 | 5.83 |
| CDY01758 | Canola | cytosol | 6.7 | 2.97 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078HN66 | UniProt:A0A078HN66 | EnsemblPlants:CDY38819 | ProteinID:CDY38819 | ProteinID:CDY38819.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00066636001 | InterPro:IPR008974 |
| PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniPathway:UPA00143 | UniParc:UPI0004EF2E4E | SEG:seg | : | : | : |
Description
BnaC08g19930DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078HN66]
Coordinates
chrLK032433:-:144447..145399
Molecular Weight (calculated)
22588.7 Da
IEP (calculated)
8.830
GRAVY (calculated)
-0.793
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHIKQTEKY NIAEYRKDTS NERTEIEGAN HVCERREQNS YPAQAETFEQ VAASALSPNP DQEQIQRSLP FLHHLLSHTS QHQKKQPLVF NCFGRQFCLH
101: FEAFQLGTAP VYMAFLRFMG DENEAKKFSY GLEVGAHSRK LTWQGIPRSI RDGHRKVRDS QNGLIIPRNM ALFFSGSDKD ELKLRVTGRI WREE
101: FEAFQLGTAP VYMAFLRFMG DENEAKKFSY GLEVGAHSRK LTWQGIPRSI RDGHRKVRDS QNGLIIPRNM ALFFSGSDKD ELKLRVTGRI WREE
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.