Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95911 | Canola | cytosol, nucleus, plastid | 92.26 | 93.2 |
| CDY01757 | Canola | cytosol | 11.78 | 66.04 |
| AT1G66620.1 | Thale cress | nucleus | 59.93 | 56.87 |
| CDY36209 | Canola | plastid | 35.35 | 49.76 |
| CDX99687 | Canola | nucleus | 44.11 | 46.29 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 54.21 | 46.13 |
| CDY52473 | Canola | nucleus | 44.11 | 46.13 |
| AT1G66610.1 | Thale cress | nucleus | 56.23 | 45.63 |
| CDY01699 | Canola | nucleus, plastid | 42.76 | 45.04 |
| CDY11709 | Canola | nucleus | 23.91 | 43.03 |
| CDY10787 | Canola | plastid | 41.41 | 42.56 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 24.58 | 40.78 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.46 | 40.66 |
| CDY01695 | Canola | nucleus | 36.7 | 35.28 |
| CDY12498 | Canola | nucleus | 31.65 | 34.56 |
| CDY25763 | Canola | nucleus | 31.65 | 34.56 |
| CDY47873 | Canola | nucleus | 35.35 | 32.41 |
| CDY27008 | Canola | nucleus | 35.35 | 31.91 |
| CDY70665 | Canola | nucleus | 31.31 | 28.7 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.21 | 28.51 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 25.93 | 28.1 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.25 | 27.27 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 19.53 | 27.1 |
| CDX96138 | Canola | nucleus | 30.98 | 27.06 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 22.9 | 26.98 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.5 | 26.63 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 24.92 | 26.62 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.92 | 26.24 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.51 | 26.0 |
| KRH58384 | Soybean | nucleus | 27.61 | 25.62 |
| KRH42263 | Soybean | nucleus | 27.27 | 25.31 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 22.56 | 25.28 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.9 | 24.82 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 22.22 | 24.81 |
| CDY36211 | Canola | nucleus | 29.97 | 24.65 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.91 | 24.23 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.22 | 24.09 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.22 | 24.09 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 22.22 | 24.09 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 24.24 | 24.08 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.22 | 24.0 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 22.56 | 23.76 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 21.21 | 23.68 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 23.23 | 23.63 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.21 | 23.51 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 21.21 | 23.42 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 21.55 | 23.1 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 21.89 | 23.05 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 21.21 | 22.91 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.25 | 22.66 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.96 | 22.57 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.27 | 22.5 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 21.21 | 22.42 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.21 | 22.34 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.94 | 22.22 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 21.21 | 22.18 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 20.88 | 22.14 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 18.86 | 22.13 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 21.55 | 22.07 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.24 | 21.95 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.87 | 21.93 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.55 | 21.92 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 22.56 | 21.82 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 24.58 | 21.73 |
| KXG32009 | Sorghum | nucleus | 21.55 | 21.62 |
| KXG37941 | Sorghum | cytosol | 20.2 | 21.43 |
| Solyc03g034450.2.1 | Tomato | nucleus | 28.28 | 21.43 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 22.56 | 21.27 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.88 | 21.23 |
| OQU78944 | Sorghum | nucleus | 22.9 | 20.86 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 21.55 | 20.85 |
| Zm00001d041049_P001 | Maize | nucleus | 22.9 | 20.8 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.55 | 20.65 |
| CDY01758 | Canola | cytosol | 29.97 | 20.37 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.54 | 20.33 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.84 | 20.24 |
| KXG32014 | Sorghum | nucleus | 14.81 | 20.0 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 22.56 | 19.76 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.52 | 19.64 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 23.57 | 19.55 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 19.53 | 19.53 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 19.53 | 19.33 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 19.53 | 19.27 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.19 | 19.19 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 22.56 | 19.03 |
| CDX92848 | Canola | nucleus | 19.53 | 19.02 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 18.86 | 18.86 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 21.21 | 18.81 |
| TraesCSU01G045900.1 | Wheat | cytosol | 18.86 | 18.73 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 20.88 | 18.67 |
| CDY06889 | Canola | cytosol | 18.52 | 18.52 |
| EES00387 | Sorghum | nucleus | 19.87 | 18.5 |
| CDX97399 | Canola | nucleus | 19.87 | 18.38 |
| CDY57244 | Canola | cytosol | 18.86 | 18.18 |
| OQU77422 | Sorghum | cytosol | 17.51 | 18.18 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.17 | 18.15 |
| CDY14268 | Canola | nucleus | 19.53 | 18.12 |
| CDX71977 | Canola | cytosol | 18.86 | 18.06 |
| CDX88968 | Canola | cytosol | 18.86 | 18.01 |
| CDY67927 | Canola | cytosol | 18.86 | 18.01 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.12 | 18.0 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 19.53 | 17.74 |
| CDX89221 | Canola | nucleus | 19.19 | 17.7 |
| CDY19018 | Canola | nucleus | 19.19 | 17.7 |
| CDX67865 | Canola | nucleus | 19.19 | 17.65 |
| CDY25077 | Canola | nucleus | 19.19 | 17.65 |
| EES17731 | Sorghum | nucleus | 20.54 | 17.63 |
| CDY35390 | Canola | nucleus | 18.18 | 17.59 |
| CDY14808 | Canola | cytosol | 17.85 | 17.55 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 22.56 | 17.54 |
| CDY43950 | Canola | nucleus | 19.19 | 17.54 |
| CDY22549 | Canola | nucleus | 18.18 | 17.48 |
| CDY67278 | Canola | cytosol | 4.71 | 17.28 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.19 | 17.27 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.54 | 17.23 |
| CDX89132 | Canola | cytosol | 18.86 | 17.18 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 21.55 | 17.07 |
| CDY56244 | Canola | cytosol | 16.5 | 16.95 |
| OQU86453 | Sorghum | cytosol | 12.12 | 16.82 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 19.19 | 16.76 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.19 | 16.76 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.88 | 16.53 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.86 | 16.47 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.47 | 16.46 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.54 | 16.44 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.54 | 16.35 |
| KXG21322 | Sorghum | nucleus | 20.54 | 16.31 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.52 | 16.13 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 21.55 | 15.8 |
| OQU77425 | Sorghum | nucleus | 19.87 | 15.69 |
| CDY06056 | Canola | cytosol | 13.8 | 15.65 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 19.19 | 15.62 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 19.19 | 15.62 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.19 | 15.62 |
| TraesCSU01G231400.1 | Wheat | nucleus | 17.17 | 14.74 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.22 | 14.47 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 22.22 | 14.22 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.89 | 14.16 |
| CDX82523 | Canola | cytosol | 10.1 | 14.02 |
| EES17735 | Sorghum | mitochondrion | 20.88 | 13.81 |
| CDX75727 | Canola | cytosol | 9.76 | 13.55 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.46 | 12.98 |
| CDY38819 | Canola | nucleus | 8.08 | 12.37 |
| EES02574 | Sorghum | nucleus | 18.18 | 12.05 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 11.11 | 11.96 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 8.75 | 11.76 |
| CDY64066 | Canola | cytosol | 3.7 | 10.19 |
| CDY67899 | Canola | cytosol, plastid | 4.38 | 7.83 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.67 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078EKR8 | EnsemblPlants:CDY01756 | ProteinID:CDY01756 | ProteinID:CDY01756.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00112880001 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 |
| PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE5DF4 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g27960D
Coordinates
chrLK031929:-:66360..68286
Molecular Weight (calculated)
33229.4 Da
IEP (calculated)
5.399
GRAVY (calculated)
-0.268
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAEKVISG GASSSSHSVF GEGTATEASD EFTVTTEEEG EVRSGTLFEL DLLDCPVCCH TLTRPVFQCD NGHIACSACC TNLRNRCPSC TLPIGVYRNR
101: MMERVVEAII VPCPNAKHGC TEMFSYGKEL VHEKECSFAL CYCPRRGCNY AGLCKDLYRH YYNCSSAREY FRCGYNVEAW MHISDKILVL QEGREGPLVA
201: IQCFEEEQGV YVTVNCITPC APGVSEFSFQ LSYSSYGGAH KTMSFGLGEM NRIQKVSFQT PDKDFMFVPH YFLAGRTDLK MNICVRRRGG EEEEENT
101: MMERVVEAII VPCPNAKHGC TEMFSYGKEL VHEKECSFAL CYCPRRGCNY AGLCKDLYRH YYNCSSAREY FRCGYNVEAW MHISDKILVL QEGREGPLVA
201: IQCFEEEQGV YVTVNCITPC APGVSEFSFQ LSYSSYGGAH KTMSFGLGEM NRIQKVSFQT PDKDFMFVPH YFLAGRTDLK MNICVRRRGG EEEEENT
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.