Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G030600.1 | Wheat | nucleus | 92.5 | 65.6 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 91.0 | 64.08 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 88.0 | 62.41 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 60.0 | 56.07 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 77.5 | 55.16 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 44.5 | 26.18 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 36.0 | 25.53 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 32.5 | 23.38 |
| PGSC0003DMT400043047 | Potato | cytosol | 21.5 | 23.37 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 34.0 | 23.29 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 34.0 | 23.21 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 32.0 | 23.1 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 30.0 | 21.9 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 30.0 | 21.9 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 19.5 | 21.79 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 27.0 | 21.34 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 49.5 | 21.34 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 31.0 | 21.23 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 25.5 | 20.65 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 31.0 | 20.2 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 28.5 | 19.52 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.5 | 19.46 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 26.0 | 17.28 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 25.0 | 16.84 |
| CDY12498 | Canola | nucleus | 21.5 | 15.81 |
| AT5G37900.1 | Thale cress | nucleus | 19.0 | 15.77 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 31.5 | 15.56 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.5 | 15.24 |
| Bra012354.1-P | Field mustard | cytosol | 20.0 | 14.71 |
| CDY25763 | Canola | nucleus | 20.0 | 14.71 |
| CDY01699 | Canola | nucleus, plastid | 20.5 | 14.54 |
| AT5G37870.1 | Thale cress | nucleus | 20.0 | 14.23 |
| CDY11709 | Canola | nucleus | 11.5 | 13.94 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 19.0 | 13.87 |
| Bra018266.1-P | Field mustard | plastid | 20.0 | 13.84 |
| CDY10787 | Canola | plastid | 20.0 | 13.84 |
| Bra000425.1-P | Field mustard | nucleus | 19.5 | 13.78 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 18.0 | 13.24 |
| AT1G66630.1 | Thale cress | cytosol | 19.5 | 12.87 |
| KRH42263 | Soybean | nucleus | 20.5 | 12.81 |
| CDY52473 | Canola | nucleus | 18.0 | 12.68 |
| Bra025434.1-P | Field mustard | nucleus | 18.0 | 12.68 |
| CDY01695 | Canola | nucleus | 19.5 | 12.62 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.0 | 12.61 |
| AT5G37890.1 | Thale cress | nucleus | 18.0 | 12.59 |
| Bra022858.1-P | Field mustard | nucleus | 19.0 | 12.5 |
| Bra004174.1-P | Field mustard | nucleus | 22.0 | 12.46 |
| AT1G66620.1 | Thale cress | nucleus | 19.5 | 12.46 |
| AT5G37910.1 | Thale cress | nucleus | 17.0 | 12.32 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 18.0 | 12.24 |
| Solyc03g034460.2.1 | Tomato | nucleus | 22.0 | 12.22 |
| KRH58384 | Soybean | nucleus | 19.5 | 12.19 |
| AT1G66650.1 | Thale cress | nucleus | 20.0 | 12.16 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.0 | 12.12 |
| AT5G62800.1 | Thale cress | nucleus | 21.0 | 12.07 |
| CDY47873 | Canola | nucleus | 19.5 | 12.04 |
| CDX99687 | Canola | nucleus | 17.0 | 12.01 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.5 | 11.94 |
| CDY27008 | Canola | nucleus | 19.5 | 11.85 |
| CDY36209 | Canola | plastid | 12.5 | 11.85 |
| Bra028395.1-P | Field mustard | nucleus | 19.0 | 11.73 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.0 | 11.59 |
| AT1G66610.1 | Thale cress | nucleus | 21.0 | 11.48 |
| TraesCS3B01G019600.1 | Wheat | plastid | 18.0 | 11.39 |
| Bra004402.1-P | Field mustard | nucleus | 18.0 | 11.36 |
| PGSC0003DMT400043050 | Potato | nucleus | 21.5 | 11.29 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.0 | 11.2 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.5 | 10.97 |
| AT5G37930.1 | Thale cress | nucleus | 18.5 | 10.6 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 17.0 | 10.4 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 16.0 | 10.29 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 17.5 | 10.26 |
| CDY70665 | Canola | nucleus | 16.5 | 10.19 |
| Bra019710.1-P | Field mustard | nucleus | 17.0 | 9.94 |
| CDY01757 | Canola | cytosol | 2.5 | 9.43 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 16.5 | 9.43 |
| Solyc03g042520.1.1 | Tomato | nucleus | 14.5 | 9.35 |
| Bra004176.1-P | Field mustard | nucleus | 15.5 | 9.2 |
| CDX96138 | Canola | nucleus | 15.5 | 9.12 |
| CDY36211 | Canola | nucleus | 16.0 | 8.86 |
| AT1G66660.2 | Thale cress | nucleus | 15.0 | 8.62 |
| TraesCS1B01G152800.1 | Wheat | plastid | 17.5 | 8.6 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 8.5 | 8.5 |
| CDY01758 | Canola | cytosol | 8.0 | 3.66 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G032300 | EnsemblPlants:TraesCS3B01G032300.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:14963926..14964528
Molecular Weight (calculated)
22198.7 Da
IEP (calculated)
6.326
GRAVY (calculated)
-0.159
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MECLMESVTV ACSNANYGCA QKLTYYQKEE HEKACPSAPC FCAASSCSFA GPTDAILEHC ASQHKWPCTT IKYSEDVELC LEPGLHFLCT KDREIFLLNV
101: ALEPCGHAIS VVCIQPKAIN SKFKCRMSYG SFLNDYYQRS VYKIRSSSLS DGLPKGYNLI LPKDEITDDG KGTLLTFSID DPNPKVKVCE PICLKPVRDV
101: ALEPCGHAIS VVCIQPKAIN SKFKCRMSYG SFLNDYYQRS VYKIRSSSLS DGLPKGYNLI LPKDEITDDG KGTLLTFSID DPNPKVKVCE PICLKPVRDV
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.