Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS1A01G190800.1 | |
TraesCS1B01G206000.1 | |
TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCSU01G045900.1 | Wheat | cytosol | 96.63 | 95.99 |
TraesCS3D01G015600.1 | Wheat | cytosol | 94.61 | 94.61 |
TraesCS3B01G028900.1 | Wheat | cytosol | 95.29 | 94.02 |
TraesCS3A01G030100.1 | Wheat | nucleus | 92.93 | 92.93 |
HORVU3Hr1G005270.1 | Barley | nucleus | 76.43 | 66.57 |
OQU86453 | Sorghum | cytosol | 35.02 | 48.6 |
KXG32014 | Sorghum | nucleus | 24.24 | 32.73 |
TraesCS3B01G560800.1 | Wheat | nucleus | 28.62 | 30.58 |
TraesCS3B01G053500.1 | Wheat | cytosol | 28.62 | 30.14 |
TraesCS3B01G074800.1 | Wheat | cytosol | 27.95 | 29.96 |
TraesCS3B01G031200.1 | Wheat | nucleus | 28.62 | 29.11 |
TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 28.28 | 28.67 |
TraesCS3B01G052800.1 | Wheat | cytosol | 26.6 | 28.01 |
TraesCS3B01G050100.1 | Wheat | cytosol | 24.92 | 27.01 |
TraesCS3B01G033800.1 | Wheat | nucleus | 24.92 | 27.01 |
TraesCS3B01G052700.1 | Wheat | nucleus | 22.9 | 26.88 |
CDY11709 | Canola | nucleus | 14.81 | 26.67 |
TraesCS3B01G053000.1 | Wheat | cytosol | 24.92 | 26.33 |
TraesCS3B01G050700.1 | Wheat | nucleus | 26.94 | 26.06 |
Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.86 | 25.34 |
TraesCS3B01G442300.1 | Wheat | cytosol | 23.23 | 25.18 |
CDY12498 | Canola | nucleus | 22.9 | 25.0 |
TraesCS3B01G032300.1 | Wheat | cytosol | 16.84 | 25.0 |
CDY25763 | Canola | nucleus | 22.9 | 25.0 |
TraesCS3B01G018000.2 | Wheat | cytosol | 22.9 | 25.0 |
TraesCS3B01G032100.1 | Wheat | cytosol | 23.57 | 24.65 |
Bra012354.1-P | Field mustard | cytosol | 22.56 | 24.63 |
TraesCS3B01G033700.1 | Wheat | nucleus | 23.91 | 24.32 |
TraesCS3B01G050900.1 | Wheat | cytosol | 23.57 | 23.97 |
KRH58384 | Soybean | nucleus | 25.59 | 23.75 |
KRH42263 | Soybean | nucleus | 25.59 | 23.75 |
TraesCS3B01G050200.1 | Wheat | nucleus | 19.53 | 23.48 |
PGSC0003DMT400043047 | Potato | cytosol | 14.48 | 23.37 |
CDY10787 | Canola | plastid | 22.56 | 23.18 |
Bra018266.1-P | Field mustard | plastid | 22.56 | 23.18 |
CDY36209 | Canola | plastid | 16.16 | 22.75 |
Bra000425.1-P | Field mustard | nucleus | 21.55 | 22.61 |
AT5G37890.1 | Thale cress | nucleus | 21.55 | 22.38 |
CDY01699 | Canola | nucleus, plastid | 21.21 | 22.34 |
CDY52473 | Canola | nucleus | 20.88 | 21.83 |
Bra028395.1-P | Field mustard | nucleus | 23.57 | 21.6 |
CDY47873 | Canola | nucleus | 23.57 | 21.6 |
AT5G37900.1 | Thale cress | nucleus | 17.51 | 21.58 |
CDX99687 | Canola | nucleus | 20.54 | 21.55 |
VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.48 | 21.5 |
Bra025434.1-P | Field mustard | nucleus | 20.54 | 21.48 |
TraesCS3B01G052400.1 | Wheat | nucleus | 24.58 | 21.47 |
CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.79 | 21.23 |
AT1G66620.1 | Thale cress | nucleus | 21.89 | 20.77 |
AT1G66630.1 | Thale cress | cytosol | 20.88 | 20.46 |
Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.52 | 20.45 |
CDY27008 | Canola | nucleus | 22.56 | 20.36 |
AT1G66650.1 | Thale cress | nucleus | 22.56 | 20.36 |
AT5G37910.1 | Thale cress | nucleus | 18.86 | 20.29 |
AT5G37870.1 | Thale cress | nucleus | 19.19 | 20.28 |
TraesCS4B01G363200.1 | Wheat | nucleus | 22.22 | 20.12 |
Bra022858.1-P | Field mustard | nucleus | 20.54 | 20.07 |
CDY01695 | Canola | nucleus | 20.88 | 20.06 |
AT5G37930.1 | Thale cress | nucleus | 23.57 | 20.06 |
TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 21.89 | 19.88 |
CDY70665 | Canola | nucleus | 21.55 | 19.75 |
TraesCS3B01G019600.1 | Wheat | plastid | 20.88 | 19.62 |
CDY01756 | Canola | cytosol, nucleus, plastid | 19.53 | 19.53 |
CDX95911 | Canola | cytosol, nucleus, plastid | 19.19 | 19.39 |
Bra019710.1-P | Field mustard | nucleus | 21.89 | 19.01 |
Solyc03g034460.2.1 | Tomato | nucleus | 22.9 | 18.89 |
AT1G66660.2 | Thale cress | nucleus | 21.89 | 18.68 |
PGSC0003DMT400043050 | Potato | nucleus | 23.57 | 18.37 |
Bra004402.1-P | Field mustard | nucleus | 19.19 | 17.98 |
TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.56 | 17.87 |
Solyc03g034450.2.1 | Tomato | nucleus | 23.57 | 17.86 |
Solyc03g042550.1.1 | Tomato | nucleus | 21.55 | 17.78 |
Bra004176.1-P | Field mustard | nucleus | 19.87 | 17.51 |
TraesCS6B01G114800.1 | Wheat | nucleus | 18.18 | 17.36 |
CDX96138 | Canola | nucleus | 19.87 | 17.35 |
TraesCS3B01G052300.1 | Wheat | nucleus | 26.6 | 17.03 |
AT5G62800.1 | Thale cress | nucleus | 19.87 | 16.95 |
Solyc03g042520.1.1 | Tomato | nucleus | 17.51 | 16.77 |
TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 19.19 | 16.72 |
TraesCS3B01G031100.1 | Wheat | nucleus | 22.56 | 16.54 |
Bra004174.1-P | Field mustard | nucleus | 19.53 | 16.43 |
CDX96140 | Canola | cytosol, nucleus, plastid | 19.19 | 16.33 |
CDY36211 | Canola | nucleus | 19.53 | 16.07 |
AT1G66610.1 | Thale cress | nucleus | 19.19 | 15.57 |
TraesCS2B01G151100.1 | Wheat | plasma membrane | 18.18 | 15.43 |
TraesCS1B01G152800.1 | Wheat | plastid | 20.54 | 14.99 |
CDY01757 | Canola | cytosol | 2.02 | 11.32 |
CDY01758 | Canola | cytosol | 11.45 | 7.78 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 |
PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF72 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
EnsemblPlantsGene:TraesCS3B01G054400 | EnsemblPlants:TraesCS3B01G054400.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
No Description!
Coordinates
chr3B:+:28102530..28105634
Molecular Weight (calculated)
32253.7 Da
IEP (calculated)
6.169
GRAVY (calculated)
-0.096
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEPPVKST KTEDLGEGSV PDAAAAAEAE EERPGGEVTV KIQSKALRCR ICSEPLKPPI FKCAAGHVLC SQCPEKLREV GHVLRLGTFC PLCCKSTSYS
101: RCVELEQFID AMKVPCSNQT YGCNEFVGYQ EKEKHESSCP HAPCYCPEDD CAFKAPACCL LDHFVTAHGW SPTNLGYNKP LKILLARDRR FMLLVGEDMS
201: LFLLINTLTS IGSALTVVCV RPHESEPSYS CNISAAHGVA GGKTDGRLVF QKDPHVSSSS LVGGVQMGNF FLLVPLEFAE TSSGELTVHI RIDRVAP
101: RCVELEQFID AMKVPCSNQT YGCNEFVGYQ EKEKHESSCP HAPCYCPEDD CAFKAPACCL LDHFVTAHGW SPTNLGYNKP LKILLARDRR FMLLVGEDMS
201: LFLLINTLTS IGSALTVVCV RPHESEPSYS CNISAAHGVA GGKTDGRLVF QKDPHVSSSS LVGGVQMGNF FLLVPLEFAE TSSGELTVHI RIDRVAP
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.