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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G045900.1 Wheat cytosol 96.63 95.99
TraesCS3D01G015600.1 Wheat cytosol 94.61 94.61
TraesCS3B01G028900.1 Wheat cytosol 95.29 94.02
TraesCS3A01G030100.1 Wheat nucleus 92.93 92.93
HORVU3Hr1G005270.1 Barley nucleus 76.43 66.57
OQU86453 Sorghum cytosol 35.02 48.6
KXG32014 Sorghum nucleus 24.24 32.73
TraesCS3B01G560800.1 Wheat nucleus 28.62 30.58
TraesCS3B01G053500.1 Wheat cytosol 28.62 30.14
TraesCS3B01G074800.1 Wheat cytosol 27.95 29.96
TraesCS3B01G031200.1 Wheat nucleus 28.62 29.11
TraesCS3B01G053400.1 Wheat cytosol, nucleus, plastid 28.28 28.67
TraesCS3B01G052800.1 Wheat cytosol 26.6 28.01
TraesCS3B01G050100.1 Wheat cytosol 24.92 27.01
TraesCS3B01G033800.1 Wheat nucleus 24.92 27.01
TraesCS3B01G052700.1 Wheat nucleus 22.9 26.88
CDY11709 Canola nucleus 14.81 26.67
TraesCS3B01G053000.1 Wheat cytosol 24.92 26.33
TraesCS3B01G050700.1 Wheat nucleus 26.94 26.06
Solyc03g036460.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 18.86 25.34
TraesCS3B01G442300.1 Wheat cytosol 23.23 25.18
CDY12498 Canola nucleus 22.9 25.0
TraesCS3B01G032300.1 Wheat cytosol 16.84 25.0
CDY25763 Canola nucleus 22.9 25.0
TraesCS3B01G018000.2 Wheat cytosol 22.9 25.0
TraesCS3B01G032100.1 Wheat cytosol 23.57 24.65
Bra012354.1-P Field mustard cytosol 22.56 24.63
TraesCS3B01G033700.1 Wheat nucleus 23.91 24.32
TraesCS3B01G050900.1 Wheat cytosol 23.57 23.97
KRH58384 Soybean nucleus 25.59 23.75
KRH42263 Soybean nucleus 25.59 23.75
TraesCS3B01G050200.1 Wheat nucleus 19.53 23.48
PGSC0003DMT400043047 Potato cytosol 14.48 23.37
CDY10787 Canola plastid 22.56 23.18
Bra018266.1-P Field mustard plastid 22.56 23.18
CDY36209 Canola plastid 16.16 22.75
Bra000425.1-P Field mustard nucleus 21.55 22.61
AT5G37890.1 Thale cress nucleus 21.55 22.38
CDY01699 Canola nucleus, plastid 21.21 22.34
CDY52473 Canola nucleus 20.88 21.83
Bra028395.1-P Field mustard nucleus 23.57 21.6
CDY47873 Canola nucleus 23.57 21.6
AT5G37900.1 Thale cress nucleus 17.51 21.58
CDX99687 Canola nucleus 20.54 21.55
VIT_14s0006g01870.t01 Wine grape cytosol 14.48 21.5
Bra025434.1-P Field mustard nucleus 20.54 21.48
TraesCS3B01G052400.1 Wheat nucleus 24.58 21.47
CDX83363 Canola cytosol, nucleus, plasma membrane 12.79 21.23
AT1G66620.1 Thale cress nucleus 21.89 20.77
AT1G66630.1 Thale cress cytosol 20.88 20.46
Bra004401.1-P Field mustard cytosol, mitochondrion, nucleus 18.52 20.45
CDY27008 Canola nucleus 22.56 20.36
AT1G66650.1 Thale cress nucleus 22.56 20.36
AT5G37910.1 Thale cress nucleus 18.86 20.29
AT5G37870.1 Thale cress nucleus 19.19 20.28
TraesCS4B01G363200.1 Wheat nucleus 22.22 20.12
Bra022858.1-P Field mustard nucleus 20.54 20.07
CDY01695 Canola nucleus 20.88 20.06
AT5G37930.1 Thale cress nucleus 23.57 20.06
TraesCS3B01G185000.1 Wheat cytoskeleton, nucleus, plasma membrane 21.89 19.88
CDY70665 Canola nucleus 21.55 19.75
TraesCS3B01G019600.1 Wheat plastid 20.88 19.62
CDY01756 Canola cytosol, nucleus, plastid 19.53 19.53
CDX95911 Canola cytosol, nucleus, plastid 19.19 19.39
Bra019710.1-P Field mustard nucleus 21.89 19.01
Solyc03g034460.2.1 Tomato nucleus 22.9 18.89
AT1G66660.2 Thale cress nucleus 21.89 18.68
PGSC0003DMT400043050 Potato nucleus 23.57 18.37
Bra004402.1-P Field mustard nucleus 19.19 17.98
TraesCS2B01G594500.1 Wheat nucleus, plastid 22.56 17.87
Solyc03g034450.2.1 Tomato nucleus 23.57 17.86
Solyc03g042550.1.1 Tomato nucleus 21.55 17.78
Bra004176.1-P Field mustard nucleus 19.87 17.51
TraesCS6B01G114800.1 Wheat nucleus 18.18 17.36
CDX96138 Canola nucleus 19.87 17.35
TraesCS3B01G052300.1 Wheat nucleus 26.6 17.03
AT5G62800.1 Thale cress nucleus 19.87 16.95
Solyc03g042520.1.1 Tomato nucleus 17.51 16.77
TraesCS7B01G244800.1 Wheat cytosol, nucleus, peroxisome 19.19 16.72
TraesCS3B01G031100.1 Wheat nucleus 22.56 16.54
Bra004174.1-P Field mustard nucleus 19.53 16.43
CDX96140 Canola cytosol, nucleus, plastid 19.19 16.33
CDY36211 Canola nucleus 19.53 16.07
AT1G66610.1 Thale cress nucleus 19.19 15.57
TraesCS2B01G151100.1 Wheat plasma membrane 18.18 15.43
TraesCS1B01G152800.1 Wheat plastid 20.54 14.99
CDY01757 Canola cytosol 2.02 11.32
CDY01758 Canola cytosol 11.45 7.78
Protein Annotations
Gene3D:3.30.40.10MapMan:35.1InterPro:7-in-absentia-prot_TRAF-domGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006511GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056GO:GO:0009987GO:GO:0019538
InterPro:IPR001841InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083PFAM:PF03145PFscan:PS50089
PFscan:PS51081PANTHER:PTHR10315PANTHER:PTHR10315:SF72InterPro:SINA-likeSUPFAM:SSF49599InterPro:TRAF-like
EnsemblPlantsGene:TraesCS3B01G054400EnsemblPlants:TraesCS3B01G054400.1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_SIAHSEG:seg
Description
No Description!
Coordinates
chr3B:+:28102530..28105634
Molecular Weight (calculated)
32253.7 Da
IEP (calculated)
6.169
GRAVY (calculated)
-0.096
Length
297 amino acids
Sequence
(BLAST)
001: MAEEPPVKST KTEDLGEGSV PDAAAAAEAE EERPGGEVTV KIQSKALRCR ICSEPLKPPI FKCAAGHVLC SQCPEKLREV GHVLRLGTFC PLCCKSTSYS
101: RCVELEQFID AMKVPCSNQT YGCNEFVGYQ EKEKHESSCP HAPCYCPEDD CAFKAPACCL LDHFVTAHGW SPTNLGYNKP LKILLARDRR FMLLVGEDMS
201: LFLLINTLTS IGSALTVVCV RPHESEPSYS CNISAAHGVA GGKTDGRLVF QKDPHVSSSS LVGGVQMGNF FLLVPLEFAE TSSGELTVHI RIDRVAP
Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.