Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G015600.1 | Wheat | cytosol | 67.74 | 77.78 |
| TraesCSU01G045900.1 | Wheat | cytosol | 67.45 | 76.92 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 67.74 | 76.74 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 66.57 | 76.43 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 66.57 | 76.43 |
| OQU86453 | Sorghum | cytosol | 30.5 | 48.6 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 9.97 | 37.36 |
| KXG32014 | Sorghum | nucleus | 19.35 | 30.0 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 23.17 | 28.73 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 19.06 | 25.79 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 19.94 | 25.66 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.13 | 24.89 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 14.66 | 24.04 |
| CDY11709 | Canola | nucleus | 11.44 | 23.64 |
| PGSC0003DMT400043047 | Potato | cytosol | 12.61 | 23.37 |
| KRH58384 | Soybean | nucleus | 21.41 | 22.81 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 19.94 | 22.67 |
| KRH42263 | Soybean | nucleus | 21.11 | 22.5 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 18.48 | 22.11 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 21.41 | 21.99 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.89 | 21.79 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.77 | 21.33 |
| CDY12498 | Canola | nucleus | 17.01 | 21.32 |
| CDY25763 | Canola | nucleus | 17.01 | 21.32 |
| Bra012354.1-P | Field mustard | cytosol | 16.72 | 20.96 |
| Bra018266.1-P | Field mustard | plastid | 17.6 | 20.76 |
| CDY10787 | Canola | plastid | 17.6 | 20.76 |
| CDY36209 | Canola | plastid | 12.61 | 20.38 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 16.72 | 20.36 |
| CDX99687 | Canola | nucleus | 16.72 | 20.14 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 10.56 | 20.11 |
| CDY52473 | Canola | nucleus | 16.72 | 20.07 |
| Bra025434.1-P | Field mustard | nucleus | 16.72 | 20.07 |
| HORVU3Hr1G018420.2 | Barley | plastid | 18.48 | 19.87 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 19.65 | 19.76 |
| Bra028395.1-P | Field mustard | nucleus | 18.77 | 19.75 |
| CDY47873 | Canola | nucleus | 18.77 | 19.75 |
| AT5G37870.1 | Thale cress | nucleus | 16.13 | 19.57 |
| AT5G37890.1 | Thale cress | nucleus | 16.13 | 19.23 |
| Bra000425.1-P | Field mustard | nucleus | 15.84 | 19.08 |
| AT1G66620.1 | Thale cress | nucleus | 17.3 | 18.85 |
| AT1G66630.1 | Thale cress | cytosol | 16.72 | 18.81 |
| CDY01699 | Canola | nucleus, plastid | 15.54 | 18.79 |
| AT5G37930.1 | Thale cress | nucleus | 19.06 | 18.62 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.66 | 18.59 |
| CDY27008 | Canola | nucleus | 17.89 | 18.54 |
| AT1G66650.1 | Thale cress | nucleus | 17.89 | 18.54 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.13 | 18.52 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 17.6 | 18.35 |
| AT5G37900.1 | Thale cress | nucleus | 12.9 | 18.26 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 17.6 | 18.18 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.54 | 18.03 |
| Solyc03g034460.2.1 | Tomato | nucleus | 18.77 | 17.78 |
| Bra022858.1-P | Field mustard | nucleus | 15.84 | 17.76 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 18.48 | 17.6 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.26 | 17.5 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 14.66 | 17.42 |
| AT5G37910.1 | Thale cress | nucleus | 14.08 | 17.39 |
| CDY70665 | Canola | nucleus | 16.42 | 17.28 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.77 | 17.25 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.06 | 17.06 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 15.54 | 17.04 |
| Bra019710.1-P | Field mustard | nucleus | 16.72 | 16.67 |
| Solyc03g042550.1.1 | Tomato | nucleus | 17.6 | 16.67 |
| CDY01695 | Canola | nucleus | 14.96 | 16.5 |
| Bra004402.1-P | Field mustard | nucleus | 15.25 | 16.4 |
| Solyc03g034450.2.1 | Tomato | nucleus | 18.77 | 16.33 |
| AT1G66660.2 | Thale cress | nucleus | 15.84 | 15.52 |
| Bra004176.1-P | Field mustard | nucleus | 15.25 | 15.43 |
| Bra004174.1-P | Field mustard | nucleus | 15.84 | 15.3 |
| CDX96138 | Canola | nucleus | 15.25 | 15.29 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 15.54 | 15.19 |
| Solyc03g042520.1.1 | Tomato | nucleus | 13.78 | 15.16 |
| AT5G62800.1 | Thale cress | nucleus | 15.25 | 14.94 |
| AT1G66610.1 | Thale cress | nucleus | 15.25 | 14.21 |
| CDY36211 | Canola | nucleus | 14.96 | 14.13 |
| HORVU1Hr1G033130.2 | Barley | plastid | 16.42 | 13.9 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 15.25 | 13.72 |
| CDY01757 | Canola | cytosol | 1.76 | 11.32 |
| CDY01758 | Canola | cytosol | 9.09 | 7.09 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287JZR6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU3Hr1G005270 | EnsemblPlants:HORVU3Hr1G005270.1 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF72 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000B489293 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287JZR6]
Coordinates
chrchr3H:-:13052895..13057117
Molecular Weight (calculated)
37003.7 Da
IEP (calculated)
6.797
GRAVY (calculated)
-0.344
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: LTSLSLEGKK TDLAQSSASP FPDCHSDLGS AVLRGAREHP AHGGRSCGEE DQDGDGTWRG VRARRSGGGA GGRGESWRRR DNRQDRLQSS PMPDLLRAPQ
101: ATHLQECGAG HVLCCQCPEK LREVGDVLRL GTFCALCCKS TRYSRCVELE WFIDAMKVPC LNQSYGCNEF VSYQQKEKHE SSCAHAPCYC PEDDCAFKAP
201: ACCLLDHLVT AHGWSPTNLG YNKPLKIPLA RDCRFTLLVG EDMSLFLLTN TLTSIGSALA VVCVRPHESE PSYSCNISAA HGVADGKSEG RLVFQKNPHV
301: SSSSLEGGVQ LGNFFLLVPP ELAESSSGEL TVHIRIDRVA P
101: ATHLQECGAG HVLCCQCPEK LREVGDVLRL GTFCALCCKS TRYSRCVELE WFIDAMKVPC LNQSYGCNEF VSYQQKEKHE SSCAHAPCYC PEDDCAFKAP
201: ACCLLDHLVT AHGWSPTNLG YNKPLKIPLA RDCRFTLLVG EDMSLFLLTN TLTSIGSALA VVCVRPHESE PSYSCNISAA HGVADGKSEG RLVFQKNPHV
301: SSSSLEGGVQ LGNFFLLVPP ELAESSSGEL TVHIRIDRVA P
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.