Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G045900.1 | Wheat | cytosol | 97.31 | 96.66 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 95.62 | 95.62 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 94.61 | 94.61 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 95.29 | 94.02 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 77.78 | 67.74 |
| OQU86453 | Sorghum | cytosol | 35.02 | 48.6 |
| KXG32014 | Sorghum | nucleus | 25.25 | 34.09 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 30.3 | 32.85 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 21.89 | 30.37 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 25.93 | 28.1 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 26.6 | 28.01 |
| CDY11709 | Canola | nucleus | 14.81 | 26.67 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 25.93 | 25.75 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 23.23 | 25.75 |
| CDY12498 | Canola | nucleus | 22.9 | 25.0 |
| CDY25763 | Canola | nucleus | 22.9 | 25.0 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.52 | 24.89 |
| Bra012354.1-P | Field mustard | cytosol | 22.56 | 24.63 |
| KRH42263 | Soybean | nucleus | 26.26 | 24.38 |
| KRH58384 | Soybean | nucleus | 26.26 | 24.38 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 28.62 | 24.15 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.81 | 23.91 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 26.6 | 23.58 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 21.89 | 23.55 |
| CDY10787 | Canola | plastid | 22.22 | 22.84 |
| Bra018266.1-P | Field mustard | plastid | 22.22 | 22.84 |
| CDY52473 | Canola | nucleus | 21.55 | 22.54 |
| Bra025434.1-P | Field mustard | nucleus | 21.55 | 22.54 |
| CDY36209 | Canola | plastid | 15.82 | 22.27 |
| CDX99687 | Canola | nucleus | 21.21 | 22.26 |
| AT5G37890.1 | Thale cress | nucleus | 21.21 | 22.03 |
| CDY01699 | Canola | nucleus, plastid | 20.88 | 21.99 |
| Bra028395.1-P | Field mustard | nucleus | 23.91 | 21.91 |
| CDY47873 | Canola | nucleus | 23.91 | 21.91 |
| Bra000425.1-P | Field mustard | nucleus | 20.88 | 21.91 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 14.81 | 21.89 |
| AT5G37900.1 | Thale cress | nucleus | 17.51 | 21.58 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 24.24 | 21.18 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 22.9 | 21.05 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.14 | 21.0 |
| AT5G37930.1 | Thale cress | nucleus | 24.58 | 20.92 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 23.57 | 20.83 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.46 | 20.67 |
| CDY27008 | Canola | nucleus | 22.9 | 20.67 |
| AT5G37910.1 | Thale cress | nucleus | 18.86 | 20.29 |
| AT1G66620.1 | Thale cress | nucleus | 21.21 | 20.13 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.18 | 20.07 |
| AT1G66650.1 | Thale cress | nucleus | 22.22 | 20.06 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 21.89 | 20.0 |
| AT5G37870.1 | Thale cress | nucleus | 18.86 | 19.93 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 16.84 | 19.84 |
| AT1G66630.1 | Thale cress | cytosol | 20.2 | 19.8 |
| CDY70665 | Canola | nucleus | 21.21 | 19.44 |
| CDY01695 | Canola | nucleus | 20.2 | 19.42 |
| Bra022858.1-P | Field mustard | nucleus | 19.87 | 19.41 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 24.92 | 19.37 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 19.19 | 19.19 |
| Solyc03g034460.2.1 | Tomato | nucleus | 23.23 | 19.17 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.24 | 18.9 |
| Bra019710.1-P | Field mustard | nucleus | 21.55 | 18.71 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 18.52 | 18.71 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 17.85 | 18.6 |
| AT1G66660.2 | Thale cress | nucleus | 21.55 | 18.39 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.24 | 18.37 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 22.56 | 18.36 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 22.9 | 18.13 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 18.18 | 17.94 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 18.18 | 17.94 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.55 | 17.78 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 26.94 | 17.43 |
| Bra004402.1-P | Field mustard | nucleus | 18.52 | 17.35 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 19.53 | 17.01 |
| Bra004176.1-P | Field mustard | nucleus | 19.19 | 16.91 |
| Solyc03g042520.1.1 | Tomato | nucleus | 17.51 | 16.77 |
| CDX96138 | Canola | nucleus | 19.19 | 16.76 |
| AT5G62800.1 | Thale cress | nucleus | 19.53 | 16.67 |
| Bra004174.1-P | Field mustard | nucleus | 18.86 | 15.86 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 18.52 | 15.76 |
| CDY36211 | Canola | nucleus | 18.86 | 15.51 |
| AT1G66610.1 | Thale cress | nucleus | 18.86 | 15.3 |
| CDY01757 | Canola | cytosol | 2.02 | 11.32 |
| CDY01758 | Canola | cytosol | 11.78 | 8.01 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF72 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G015600 | EnsemblPlants:TraesCS3D01G015600.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:5601872..5605792
Molecular Weight (calculated)
32150.5 Da
IEP (calculated)
6.486
GRAVY (calculated)
-0.101
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEPSVKRT KTEDLGAGSE PDAATPAAAE EERPGGEVTV KIQSKALCCR ICSEPLKPPI FKCAAGHVLC SQCPEKLREV GHVLRLGTFC ALCCKSTSYS
101: RCVELEQFID AMKVPCSNQT YGCNEYVSYQ QKEKHESSCP HAPCYCPEDD CAFKAPACCL LDHFVTAHGW SPTNLGYNKP LKILLARDRR FTLLVGEDMS
201: LFLLINTLTS IGSALAVVCV RPHESEPSYS CNISAAHGVA GGKTDGRLVF QKDPHVSSSS LAGGVQMGNF FLLVPLEFAE TSSGELTVHI RIDRVAS
101: RCVELEQFID AMKVPCSNQT YGCNEYVSYQ QKEKHESSCP HAPCYCPEDD CAFKAPACCL LDHFVTAHGW SPTNLGYNKP LKILLARDRR FTLLVGEDMS
201: LFLLINTLTS IGSALAVVCV RPHESEPSYS CNISAAHGVA GGKTDGRLVF QKDPHVSSSS LAGGVQMGNF FLLVPLEFAE TSSGELTVHI RIDRVAS
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.