Factsheet for TraesCS1D01G134000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, plasma membrane

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 2
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	99.21	72.05
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	91.67	71.08
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	97.22	71.01
EES19270	Sorghum	cytosol, nucleus, peroxisome	97.62	69.69
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	98.02	68.42
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	92.46	68.33
TraesCS2D01G131700.1	Wheat	cytosol	78.17	65.45
TraesCS4D01G164700.1	Wheat	nucleus	77.78	65.12
HORVU1Hr1G033130.2	Barley	plastid	98.81	61.79
TraesCS1B01G152800.1	Wheat	plastid	98.81	61.18
TraesCS3D01G028800.1	Wheat	nucleus	16.67	19.63
TraesCS3D01G029000.1	Wheat	cytosol	21.03	18.79
TraesCS3D01G504900.1	Wheat	nucleus	20.24	18.61
TraesCS5D01G504400.1	Wheat	cytosol	14.29	17.91
TraesCS3D01G031300.1	Wheat	nucleus	19.05	17.52
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	19.05	17.39
TraesCS3D01G030300.1	Wheat	nucleus	20.63	17.39
TraesCS3D01G015600.1	Wheat	cytosol	19.84	16.84
TraesCS3D01G018100.1	Wheat	cytosol	17.86	16.79
TraesCS3D01G029600.1	Wheat	nucleus	21.43	16.12
TraesCS3D01G029300.1	Wheat	nucleus	21.43	15.88
TraesCS1D01G061700.1	Wheat	nucleus	21.43	15.34
TraesCS3D01G018300.1	Wheat	mitochondrion	19.44	15.17
TraesCS4D01G356400.2	Wheat	nucleus	19.05	14.29
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	15.87	14.04
TraesCS2D01G564800.1	Wheat	nucleus, plastid	19.44	13.07
TraesCS2D01G600200.1	Wheat	nucleus	18.25	12.6
TraesCS3D01G029400.1	Wheat	nucleus	22.62	12.42
TraesCS1D01G102900.1	Wheat	nucleus	15.87	10.47

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS1D01G134000
EnsemblPlants:TraesCS1D01G134000.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	TIGR:cd03829	:	:

Description

No Description!

Coordinates

chr1D:+:165203036..165203912

Molecular Weight (calculated)

28898.7 Da

IEP (calculated)

7.995

GRAVY (calculated)

-0.408

Length

252 amino acids

Sequence
(BLAST)

001: MFLQCQNGHT LCSTCKARVH NRCPTCRQEL GDIRCLALEK VAESLELPCK YCSLGCPEIF PYYSKIKHEG QCSFRPYNCP YAGSECAVAG DIPFLVAHLR
101: DDHKVDMHSG CTFNHRYVKS NPREVENATW MLTVFHCFGQ YFCLHFEAFQ LGMAPVYMAF LRFMGDENEA RNYTYSLEVG GNGRKMVWEG TPRSIRDSHR
201: KVRDSHDGLI IQRNMALFFS GGDRKELKLR VTGRIWKEQP NPEGTCIPNL CS

Best Arabidopsis Sequence Match ( AT5G53360.3 )
(BLAST)

001: MDILYVQPVN QECIIALEKV AESLELPCKY YNLGCLGIFP YYSKLKHESQ CNFRPYSCPY AGSECAAVGD ITFLVAHLRD DHKVDMHTGC TFNHRYVKSN
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS

Arabidopsis Description

TRAF-like superfamily protein [Source:TAIR;Acc:AT5G53360]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.