Factsheet for Zm00001d037790_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	71.01	97.22
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	95.36	94.27
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	88.99	88.47
Zm00001d015952_P001	Maize	nucleus	78.55	79.47
Zm00001d053289_P001	Maize	cytosol	78.84	78.39
HORVU1Hr1G033130.2	Barley	plastid	88.7	75.93
TraesCS1B01G152800.1	Wheat	plastid	88.41	74.94
Zm00001d029203_P002	Maize	cytosol	63.19	72.19
Zm00001d022401_P002	Maize	cytosol	62.61	71.52
Zm00001d015123_P001	Maize	cytosol	59.13	65.18
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	15.94	24.55
Zm00001d041049_P001	Maize	nucleus	15.94	16.82

Protein Annotations

EntrezGene:100192741	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AQK84812.1
UniProt:B4FCG7	EMBL:BT034805	EMBL:EU967072	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI00017B6681	EnsemblPlantsGene:Zm00001d037790	EnsemblPlants:Zm00001d037790_P001	EnsemblPlants:Zm00001d037790_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT4

Coordinates

chr6:+:137856386..137865363

Molecular Weight (calculated)

37972.4 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.281

Length

345 amino acids

Sequence
(BLAST)

001: MDMDSVECLS LPDAAMDVDD IEGRPHHGHL GLPLHPAHLP SSGAGRAFPK VNAGGAVAGP AGAAGTAGAG VGPPATSVHE LLECPVCTNS MFPPIHQCQN
101: GHTLCSTCKA RVHNRCPTCR QELGDIRCLA LEKVAESLEL PCKYCSLGCP EIFPYYSKIK HEAQCSFRPY TCPYAGSECA VAGDIPFLVA HLRDDHKVDM
201: HSGCTFNHRY VKSNPREVEN ATWMLTVFHC FGQYFCLHFE AFQLGMAPVY MAFLRFMGDE NDARNYTYSL EVGGNGRKMV WEGTPRSIRD SHRKVRDSHD
301: GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK EQTNPDGACI PNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.