Factsheet for Zm00001d015952_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06707	Sorghum	nucleus	97.07	96.22
Zm00001d053289_P001	Maize	cytosol	95.31	93.66
HORVU7Hr1G082100.1	Barley	nucleus	78.59	93.38
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	86.51	86.51
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	86.51	86.51
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	88.27	86.25
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	86.22	86.22
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	79.47	78.55
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	79.47	77.65
Zm00001d022401_P002	Maize	cytosol	63.05	71.19
Zm00001d029203_P002	Maize	cytosol	62.76	70.86
Zm00001d015123_P001	Maize	cytosol	59.82	65.18
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	16.13	24.55
Zm00001d041049_P001	Maize	nucleus	16.13	16.82

Protein Annotations

EntrezGene:103626898	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AQK69798.1
EMBL:BT060732	UniProt:C0HEH6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0001948524
EnsemblPlantsGene:Zm00001d015952	EnsemblPlants:Zm00001d015952_P001	EnsemblPlants:Zm00001d015952_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase SINAT4

Coordinates

chr5:+:133821714..133825615

Molecular Weight (calculated)

38064.2 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.296

Length

341 amino acids

Sequence
(BLAST)

001: MELDSIECMS YSDSMGDDDT DAVTSSQLPR PFLKSSSTAG TAAVNVVVVS DRVGAAGPVA GAGSLVISPA TGVHELLECP VCTNSMYPPI HQCQNGHTLC
101: STCKTRVHNR CPTCRQELGD IRCLALEKVA ESLELPCKYY SLGCSEVFPY YSKLKHESQC NFRPYNCPYA GSECSVVGDI SFLVAHLRDD HKVDMHSGCT
201: FNHRYVKSNP REVENATWML TVFHCFGQYF CLHFEAFQLG MAPVYMAFLR FMGDENDARN YSYSLEVGAN GRKMIWEGTP RSIRDSHRKV RDSHDGLIIQ
301: RNMALFFSGG ERKELKLRVT GRIWKEQQNP DSGACIPNLF S

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.