CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015952_P001	Maize	nucleus	96.22	97.07
Zm00001d053289_P001	Maize	cytosol	97.67	96.83
HORVU7Hr1G082100.1	Barley	nucleus	78.2	93.73
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	87.21	87.98
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	87.21	87.98
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	87.21	87.98
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	88.66	87.39
EES02178	Sorghum	cytosol, nucleus, peroxisome	74.71	83.71
EES19270	Sorghum	cytosol, nucleus, peroxisome	79.36	77.34
EER97677	Sorghum	cytosol	63.37	72.19
EER92255	Sorghum	nucleus	63.37	72.19
KXG19745	Sorghum	extracellular	18.9	67.71
OQU84285	Sorghum	cytosol	60.17	66.56
KXG22272	Sorghum	cytosol	16.28	54.9
KXG30435	Sorghum	cytosol	16.28	54.9
KXG32011	Sorghum	cytosol	17.73	25.1
KXG32008	Sorghum	cytosol, nucleus, plastid	18.9	24.44
KXG32010	Sorghum	extracellular	17.15	24.08
KXG32014	Sorghum	nucleus	14.53	22.73
KXG37942	Sorghum	cytosol, nucleus, plastid	16.86	21.8
OQU86439	Sorghum	cytosol, mitochondrion, plastid	16.86	21.8
KXG37941	Sorghum	cytosol	17.15	21.07
KXG32009	Sorghum	nucleus	17.15	19.93
EES00387	Sorghum	nucleus	17.15	18.5
OQU86460	Sorghum	nucleus	17.73	18.26
EES02573	Sorghum	cytosol	18.31	18.05
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	16.86	17.79
OQU77422	Sorghum	cytosol	14.53	17.48
KXG32019	Sorghum	nucleus, plastid	18.6	17.2
OQU78944	Sorghum	nucleus	16.28	17.18
EES17728	Sorghum	cytosol, mitochondrion, nucleus	16.28	17.13
KXG32028	Sorghum	plastid	16.57	16.96
OQU77414	Sorghum	mitochondrion, nucleus	16.57	16.1
KXG32085	Sorghum	nucleus	10.47	15.93
EES17731	Sorghum	nucleus	15.99	15.9
OQU86453	Sorghum	cytosol	9.59	15.42
KXG21322	Sorghum	nucleus	16.28	14.97
OQU77425	Sorghum	nucleus	14.83	13.56
EES17735	Sorghum	mitochondrion	16.57	12.69
EES02574	Sorghum	nucleus	13.66	10.49

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8077759	UniProt:C5Y0I4
EnsemblPlants:EES06707	ProteinID:EES06707	ProteinID:EES06707.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3004G130900	SUPFAM:SSF49599
SUPFAM:SSF57850	unigene:Sbi.14627	InterPro:TRAF-like	UniParc:UPI0001A86006	RefSeq:XP_002453731.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:17426192..17432325

Molecular Weight (calculated)

38305.5 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.300

Length

344 amino acids

Sequence
(BLAST)

001: MELDSIECVS YSDGMEDDDD TAAVTSSQLP RPFLKSSSTA GTAAAAVNVV VVSDRTGAAG PVAGAGPLVI SPATGVHELL ECPVCTNSMY PPIHQCQNGH
101: TLCSTCKTRV HNRCPTCRQE LGDIRCLALE KVAESLELPC KYYSLGCPEV FPYYSKLKHE SQCNFRPYNC PYAGSECSVV GDIPFLVAHL RDDHKVDMHS
201: GCTFNHRYVK SNPREVENAT WMLTVFHCFG QYFCLHFEAF QLGMAPVYMA FLRFMGDEND ARNYSYSLEV GANGRKMIWE GTPRSIRDSH RKVRDSHDGL
301: IIQRNMALFF SGGDRKELKL RVTGRIWKEQ QNPDSGACIP NLFS

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.