CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	86.97	85.58
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	90.23	84.71
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	89.58	84.62
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	89.9	84.4
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	92.18	81.56
EES19270	Sorghum	cytosol, nucleus, peroxisome	88.6	77.05
EES06707	Sorghum	nucleus	83.71	74.71
EER97677	Sorghum	cytosol	70.68	71.85
EER92255	Sorghum	nucleus	69.38	70.53
KXG19745	Sorghum	extracellular	21.17	67.71
OQU84285	Sorghum	cytosol	65.47	64.63
KXG22272	Sorghum	cytosol	18.57	55.88
KXG30435	Sorghum	cytosol	18.57	55.88
KXG32011	Sorghum	cytosol	19.54	24.69
KXG32010	Sorghum	extracellular	19.54	24.49
KXG32008	Sorghum	cytosol, nucleus, plastid	19.87	22.93
KXG37942	Sorghum	cytosol, nucleus, plastid	19.22	22.18
KXG37941	Sorghum	cytosol	19.87	21.79
KXG32014	Sorghum	nucleus	15.31	21.36
KXG32009	Sorghum	nucleus	19.54	20.27
OQU86439	Sorghum	cytosol, mitochondrion, plastid	16.29	18.8
OQU77422	Sorghum	cytosol	16.61	17.83
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	18.89	17.79
EES00387	Sorghum	nucleus	18.24	17.55
EES02573	Sorghum	cytosol	19.54	17.19
OQU86460	Sorghum	nucleus	18.57	17.07
KXG32028	Sorghum	plastid	18.57	16.96
KXG32085	Sorghum	nucleus	12.38	16.81
OQU78944	Sorghum	nucleus	17.59	16.56
KXG32019	Sorghum	nucleus, plastid	19.87	16.4
EES17728	Sorghum	cytosol, mitochondrion, nucleus	16.94	15.9
OQU77414	Sorghum	mitochondrion, nucleus	18.24	15.82
OQU86453	Sorghum	cytosol	10.75	15.42
KXG21322	Sorghum	nucleus	17.92	14.71
EES17731	Sorghum	nucleus	16.29	14.45
OQU77425	Sorghum	nucleus	15.64	12.77
EES17735	Sorghum	mitochondrion	16.94	11.58
EES02574	Sorghum	nucleus	14.66	10.04

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8077555	UniProt:C5XJK7
EnsemblPlants:EES02178	ProteinID:EES02178	ProteinID:EES02178.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G005100	SUPFAM:SSF49599
SUPFAM:SSF57850	unigene:Sbi.11428	InterPro:TRAF-like	UniParc:UPI0001A84D86	RefSeq:XP_002457058.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:454700..457842

Molecular Weight (calculated)

34309.0 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.316

Length

307 amino acids

Sequence
(BLAST)

001: MDVDCVSLPD AAAPAADMDG AVAAAAAARP WPKAAANGGV HELLECPVCT NSMFPPIHQC QNGHTLCSTC KARVHNRCPT CRQELGDIRC LALEKVAESL
101: ELPCKYYTLG CPEIFPYYSK IKHEAQCSLR PYNCPYAGSE CAAAGDIPYL VSHLRDDHKV DMHSGCTFNH RYVKSNPREV ENATWMLTVF HCFGQYFCLH
201: FEAFQLGMAP VYMAFLRFMG DENEAKNYSY SLEVGANGRK MVWEGTPRSV RDSHRKVRDS HDGLIIQRNM ALFFSGGDRK ELKLRITGRI WKEQQTPDGA
301: CIPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.