Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 38.81 | 41.26 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 43.36 | 35.03 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 39.86 | 34.86 |
| EES17731 | Sorghum | nucleus | 39.16 | 32.37 |
| OQU77425 | Sorghum | nucleus | 42.31 | 32.18 |
| KXG21322 | Sorghum | nucleus | 41.61 | 31.82 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 27.62 | 29.7 |
| CDY11709 | Canola | nucleus | 16.43 | 28.48 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 25.87 | 27.82 |
| KXG32009 | Sorghum | nucleus | 27.27 | 26.35 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 33.92 | 25.39 |
| KXG37941 | Sorghum | cytosol | 24.83 | 25.36 |
| CDY12498 | Canola | nucleus | 23.08 | 24.26 |
| Bra012354.1-P | Field mustard | cytosol | 22.73 | 23.9 |
| CDY25763 | Canola | nucleus | 22.73 | 23.9 |
| EES17735 | Sorghum | mitochondrion | 37.06 | 23.61 |
| CDX99687 | Canola | nucleus | 22.73 | 22.97 |
| Bra025434.1-P | Field mustard | nucleus | 22.73 | 22.89 |
| CDY52473 | Canola | nucleus | 22.38 | 22.54 |
| KXG32010 | Sorghum | extracellular | 19.23 | 22.45 |
| CDY36209 | Canola | plastid | 16.08 | 21.8 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.78 | 21.72 |
| KXG32011 | Sorghum | cytosol | 18.18 | 21.4 |
| EES00387 | Sorghum | nucleus | 23.78 | 21.32 |
| CDY01699 | Canola | nucleus, plastid | 20.63 | 20.92 |
| AT5G37870.1 | Thale cress | nucleus | 20.28 | 20.64 |
| Bra000425.1-P | Field mustard | nucleus | 20.28 | 20.49 |
| AT5G37910.1 | Thale cress | nucleus | 19.58 | 20.29 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.88 | 20.07 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.99 | 20.0 |
| AT5G37890.1 | Thale cress | nucleus | 19.93 | 19.93 |
| CDY47873 | Canola | nucleus | 22.38 | 19.75 |
| KXG32085 | Sorghum | nucleus | 15.38 | 19.47 |
| Bra028395.1-P | Field mustard | nucleus | 22.03 | 19.44 |
| OQU86453 | Sorghum | cytosol | 14.34 | 19.16 |
| CDY10787 | Canola | plastid | 19.23 | 19.03 |
| Bra018266.1-P | Field mustard | plastid | 19.23 | 19.03 |
| CDY27008 | Canola | nucleus | 21.68 | 18.84 |
| CDY01695 | Canola | nucleus | 20.28 | 18.77 |
| KRH58384 | Soybean | nucleus | 20.98 | 18.75 |
| KRH42263 | Soybean | nucleus | 20.98 | 18.75 |
| OQU78944 | Sorghum | nucleus | 21.33 | 18.71 |
| KXG32014 | Sorghum | nucleus | 14.34 | 18.64 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.89 | 18.48 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 18.88 | 18.37 |
| AT1G66650.1 | Thale cress | nucleus | 20.98 | 18.24 |
| OQU86460 | Sorghum | nucleus | 20.98 | 17.96 |
| CDY70665 | Canola | nucleus | 20.28 | 17.9 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.19 | 17.88 |
| KXG32028 | Sorghum | plastid | 20.98 | 17.86 |
| AT5G37900.1 | Thale cress | nucleus | 15.04 | 17.84 |
| AT5G37930.1 | Thale cress | nucleus | 21.68 | 17.77 |
| Bra022858.1-P | Field mustard | nucleus | 18.88 | 17.76 |
| AT1G66620.1 | Thale cress | nucleus | 19.23 | 17.57 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.18 | 17.51 |
| Solyc03g042550.1.1 | Tomato | nucleus | 22.03 | 17.5 |
| Solyc03g034460.2.1 | Tomato | nucleus | 22.03 | 17.5 |
| Bra004402.1-P | Field mustard | nucleus | 18.88 | 17.03 |
| Bra019710.1-P | Field mustard | nucleus | 20.28 | 16.96 |
| AT1G66630.1 | Thale cress | cytosol | 17.83 | 16.83 |
| Bra004174.1-P | Field mustard | nucleus | 20.63 | 16.71 |
| AT5G62800.1 | Thale cress | nucleus | 20.28 | 16.67 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 20.28 | 16.62 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 17.83 | 16.61 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 18.88 | 16.56 |
| EER97677 | Sorghum | cytosol | 17.48 | 16.56 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.03 | 16.54 |
| EER92255 | Sorghum | nucleus | 17.13 | 16.23 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 15.04 | 16.17 |
| AT1G66660.2 | Thale cress | nucleus | 19.58 | 16.09 |
| OQU84285 | Sorghum | cytosol | 17.48 | 16.08 |
| Solyc03g042520.1.1 | Tomato | nucleus | 16.78 | 15.48 |
| Bra004176.1-P | Field mustard | nucleus | 18.18 | 15.43 |
| Solyc03g034450.2.1 | Tomato | nucleus | 20.98 | 15.31 |
| CDX96138 | Canola | nucleus | 18.18 | 15.29 |
| EES02573 | Sorghum | cytosol | 18.53 | 15.19 |
| KXG32019 | Sorghum | nucleus, plastid | 19.23 | 14.78 |
| EES06707 | Sorghum | nucleus | 17.48 | 14.53 |
| AT1G66610.1 | Thale cress | nucleus | 18.53 | 14.48 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 17.83 | 14.45 |
| CDY36211 | Canola | nucleus | 18.18 | 14.4 |
| EES02574 | Sorghum | nucleus | 22.03 | 14.06 |
| CDY01757 | Canola | cytosol | 1.75 | 9.43 |
| CDY01758 | Canola | cytosol | 12.94 | 8.47 |
| KXG30435 | Sorghum | cytosol | 2.8 | 7.84 |
| KXG22272 | Sorghum | cytosol | 2.8 | 7.84 |
| KXG19745 | Sorghum | extracellular | 2.1 | 6.25 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:8075994 | UniProt:A0A1Z5R0W5 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:OQU77422 | ProteinID:OQU77422 | ProteinID:OQU77422.1 | ProteinID:OQU77423.1 |
| PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3009G047500 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0001A88C82 | RefSeq:XP_002440612.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:4486799..4488053
Molecular Weight (calculated)
31292.5 Da
IEP (calculated)
7.580
GRAVY (calculated)
-0.051
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSAPD LTVADEDVLE CGVCFLPLKP PIFQCARGHV LCSPCSDKLR DAGKCHLCGV AMPGGYQRCH AMERVVDSVR TPCPRAPYGC EARPLYHALQ
101: DHVLASCAHA PCHCPAAAAA GEPAACGFKG SIPALLDHVG GAHGWPCTTA RYGAPSCSVH LRDGFNFFVS HSHNVDEHGR RYLYLFNVVR HGFCRAASVI
201: RVCPRVPAVK RVKLVLSFSY PKKREGMNET LVNDQFFHEQ RIEFRVACSD LSDGLPDSYQ LIVSKYLLRD DDDDMVVVVK QIFSSV
101: DHVLASCAHA PCHCPAAAAA GEPAACGFKG SIPALLDHVG GAHGWPCTTA RYGAPSCSVH LRDGFNFFVS HSHNVDEHGR RYLYLFNVVR HGFCRAASVI
201: RVCPRVPAVK RVKLVLSFSY PKKREGMNET LVNDQFFHEQ RIEFRVACSD LSDGLPDSYQ LIVSKYLLRD DDDDMVVVVK QIFSSV
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.