CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32011	Sorghum	cytosol	30.97	28.81
HORVU7Hr1G021160.2	Barley	cytosol	35.84	28.42
OQU86439	Sorghum	cytosol, mitochondrion, plastid	33.19	28.2
KXG32010	Sorghum	extracellular	30.09	27.76
TraesCS4A01G395500.1	Wheat	cytosol	33.63	27.24
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	36.28	27.15
TraesCS4A01G395600.1	Wheat	cytosol	27.43	23.94
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	26.99	18.71
EES02573	Sorghum	cytosol	28.76	18.62
KXG32019	Sorghum	nucleus, plastid	30.53	18.55
KXG32008	Sorghum	cytosol, nucleus, plastid	19.91	16.92
KXG32014	Sorghum	nucleus	16.37	16.82
OQU77422	Sorghum	cytosol	19.47	15.38
OQU86460	Sorghum	nucleus	22.57	15.27
KXG32028	Sorghum	plastid	22.12	14.88
KXG37942	Sorghum	cytosol, nucleus, plastid	17.26	14.66
OQU78944	Sorghum	nucleus	20.8	14.42
OQU84285	Sorghum	cytosol	19.47	14.15
EER92255	Sorghum	nucleus	17.26	12.91
EES17728	Sorghum	cytosol, mitochondrion, nucleus	18.58	12.84
EER97677	Sorghum	cytosol	16.81	12.58
EES00387	Sorghum	nucleus	17.7	12.54
KXG32009	Sorghum	nucleus	16.37	12.5
KXG37941	Sorghum	cytosol	15.49	12.5
EES02178	Sorghum	cytosol, nucleus, peroxisome	16.81	12.38
EES17731	Sorghum	nucleus	18.14	11.85
KXG21322	Sorghum	nucleus	18.58	11.23
OQU86453	Sorghum	cytosol	10.62	11.21
OQU77414	Sorghum	mitochondrion, nucleus	17.26	11.02
EES19270	Sorghum	cytosol, nucleus, peroxisome	16.81	10.76
EES17735	Sorghum	mitochondrion	20.8	10.47
EES06707	Sorghum	nucleus	15.93	10.47
OQU77425	Sorghum	nucleus	16.37	9.84
EES02574	Sorghum	nucleus	18.58	9.38
KXG22272	Sorghum	cytosol	1.77	3.92
KXG30435	Sorghum	cytosol	1.77	3.92
KXG19745	Sorghum	extracellular	0.88	2.08

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6Q2K1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KXG32085	ProteinID:KXG32085
ProteinID:KXG32085.1	ProteinID:KXG32086.1	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF71	InterPro:SINA-like
EnsemblPlantsGene:SORBI_3003G097900	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI00081AE42F	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:8626250..8627845

Molecular Weight (calculated)

25046.5 Da

IEP (calculated)

9.525

GRAVY (calculated)

-0.546

Length

226 amino acids

Sequence
(BLAST)

001: MKRNAKKATE KDGAKAPPAR QSPRKRPCTD KKGEVREEED RHVWLDSDAK SLDCGICFMP FEAEVFMCIN GHAACAECCV RINKKCWCCG EAIGRVRCRP
101: VENMLAEMNT LCKFSNYGCA EIIKFVQKRA HEESCRHAPY GCPVDGCSYR GMNMGLYAGA GALPVPGLPR PAPGRERRRQ VQDGGARLRW RRRALAAGDG
201: VVHPRARGLR GQQVPLRAGC VLGAFR

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.