Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0123800-00 | Rice | nucleus | 38.39 | 44.56 |
| TraesCSU01G231400.1 | Wheat | nucleus | 32.81 | 42.49 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 24.78 | 39.64 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 32.14 | 38.4 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 32.14 | 38.4 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 31.92 | 38.34 |
| HORVU2Hr1G118840.1 | Barley | plastid | 31.25 | 37.74 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 30.13 | 36.99 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 29.46 | 36.16 |
| CDY11709 | Canola | nucleus | 8.71 | 23.64 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 13.84 | 23.31 |
| AT5G37910.1 | Thale cress | nucleus | 14.06 | 22.83 |
| OQU77422 | Sorghum | cytosol | 14.06 | 22.03 |
| CDY01699 | Canola | nucleus, plastid | 13.84 | 21.99 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 10.71 | 21.72 |
| KRH42263 | Soybean | nucleus | 15.4 | 21.56 |
| CDX99687 | Canola | nucleus | 13.62 | 21.55 |
| KRH58384 | Soybean | nucleus | 15.18 | 21.25 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 8.48 | 21.23 |
| Bra000425.1-P | Field mustard | nucleus | 13.39 | 21.2 |
| CDY52473 | Canola | nucleus | 13.39 | 21.13 |
| Bra025434.1-P | Field mustard | nucleus | 13.39 | 21.13 |
| AT5G37870.1 | Thale cress | nucleus | 12.95 | 20.64 |
| KXG32009 | Sorghum | nucleus | 13.62 | 20.61 |
| CDY36209 | Canola | plastid | 9.6 | 20.38 |
| OQU78944 | Sorghum | nucleus | 14.73 | 20.25 |
| PGSC0003DMT400043047 | Potato | cytosol | 8.26 | 20.11 |
| KXG37941 | Sorghum | cytosol | 12.5 | 20.0 |
| AT5G37890.1 | Thale cress | nucleus | 12.72 | 19.93 |
| CDY12498 | Canola | nucleus | 12.05 | 19.85 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 11.61 | 19.55 |
| AT5G37900.1 | Thale cress | nucleus | 10.49 | 19.5 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 8.71 | 19.5 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 15.4 | 19.49 |
| AT1G66630.1 | Thale cress | cytosol | 13.17 | 19.47 |
| Bra012354.1-P | Field mustard | cytosol | 11.61 | 19.12 |
| CDY25763 | Canola | nucleus | 11.61 | 19.12 |
| Bra018266.1-P | Field mustard | plastid | 12.28 | 19.03 |
| CDY10787 | Canola | plastid | 12.28 | 19.03 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 13.84 | 18.96 |
| KXG32011 | Sorghum | cytosol | 10.27 | 18.93 |
| CDY70665 | Canola | nucleus | 13.62 | 18.83 |
| EES00387 | Sorghum | nucleus | 13.39 | 18.81 |
| CDY01695 | Canola | nucleus | 12.95 | 18.77 |
| KXG32085 | Sorghum | nucleus | 9.38 | 18.58 |
| Bra028395.1-P | Field mustard | nucleus | 13.39 | 18.52 |
| Solyc03g034450.2.1 | Tomato | nucleus | 16.07 | 18.37 |
| Solyc03g042550.1.1 | Tomato | nucleus | 14.73 | 18.33 |
| CDY47873 | Canola | nucleus | 13.17 | 18.21 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 12.05 | 18.18 |
| Solyc03g034460.2.1 | Tomato | nucleus | 14.51 | 18.06 |
| OQU86460 | Sorghum | nucleus | 13.39 | 17.96 |
| KXG32010 | Sorghum | extracellular | 9.82 | 17.96 |
| AT1G66650.1 | Thale cress | nucleus | 13.17 | 17.93 |
| PGSC0003DMT400043050 | Potato | nucleus | 15.18 | 17.85 |
| Bra019710.1-P | Field mustard | nucleus | 13.62 | 17.84 |
| CDY27008 | Canola | nucleus | 12.95 | 17.63 |
| EES17731 | Sorghum | nucleus | 13.39 | 17.34 |
| AT5G62800.1 | Thale cress | nucleus | 13.39 | 17.24 |
| KXG21322 | Sorghum | nucleus | 14.29 | 17.11 |
| Bra022858.1-P | Field mustard | nucleus | 11.61 | 17.11 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 11.16 | 17.01 |
| AT1G66620.1 | Thale cress | nucleus | 11.83 | 16.93 |
| AT5G37930.1 | Thale cress | nucleus | 13.17 | 16.91 |
| KXG32014 | Sorghum | nucleus | 8.26 | 16.82 |
| Solyc03g042520.1.1 | Tomato | nucleus | 11.61 | 16.77 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 9.82 | 16.54 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.82 | 16.36 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 12.72 | 16.33 |
| Bra004176.1-P | Field mustard | nucleus | 12.28 | 16.32 |
| OQU77425 | Sorghum | nucleus | 13.62 | 16.22 |
| Bra004174.1-P | Field mustard | nucleus | 12.72 | 16.15 |
| EER92255 | Sorghum | nucleus | 10.71 | 15.89 |
| CDX96138 | Canola | nucleus | 12.05 | 15.88 |
| CDY36211 | Canola | nucleus | 12.72 | 15.79 |
| KXG32028 | Sorghum | plastid | 11.83 | 15.77 |
| Bra004402.1-P | Field mustard | nucleus | 11.16 | 15.77 |
| OQU86453 | Sorghum | cytosol | 7.37 | 15.42 |
| EES17735 | Sorghum | mitochondrion | 15.4 | 15.37 |
| EER97677 | Sorghum | cytosol | 10.27 | 15.23 |
| OQU84285 | Sorghum | cytosol | 10.49 | 15.11 |
| AT1G66660.2 | Thale cress | nucleus | 11.61 | 14.94 |
| AT1G66610.1 | Thale cress | nucleus | 12.05 | 14.75 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 10.04 | 14.66 |
| KXG32019 | Sorghum | nucleus, plastid | 12.05 | 14.52 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 10.49 | 14.42 |
| EES02573 | Sorghum | cytosol | 10.94 | 14.04 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 10.94 | 13.88 |
| KXG22272 | Sorghum | cytosol | 3.12 | 13.73 |
| KXG30435 | Sorghum | cytosol | 3.12 | 13.73 |
| EES06707 | Sorghum | nucleus | 10.49 | 13.66 |
| KXG19745 | Sorghum | extracellular | 2.46 | 11.46 |
| CDY01758 | Canola | cytosol | 8.48 | 8.7 |
| CDY01757 | Canola | cytosol | 0.89 | 7.55 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:C5XE41 | EnsemblPlants:EES02574 | ProteinID:EES02574 |
| ProteinID:EES02574.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF44 | InterPro:SINA-like |
| EnsemblPlantsGene:SORBI_3003G090400 | SUPFAM:SSF49599 | unigene:Sbi.5609 | InterPro:TRAF-like | UniParc:UPI0001A84C46 | RefSeq:XP_002457454.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:7871599..7873311
Molecular Weight (calculated)
50312.6 Da
IEP (calculated)
8.727
GRAVY (calculated)
-0.959
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGSSEDED RSPDPVASRR AAAAAGDRSR RAKAKRNRRS PSYLSLRDRA QDGGWRRRSP SRRRGCRYFD DHVERRSWSR SPSPIRRRRQ SRSPSPIRRR
101: RARSGSDRDE EEPDRHGRSP RRGPAAPRSC RSRSRTRSEE CEDRLCCRRS RSPGDDDDDG ERSVSPPPQE DFYLRIDRSD DLFKCAYCFE LLSSPVYECV
201: DGHVTCGVCH ESANEGDDGE AGDDRCIRCG STEYRRSRAV AGWLKSVLFP CGNHDYGCPA FLPRHKMEAH ERSCHYAPVF CPVDWRCDFP GGPTDALERH
301: VTAVHGWAVV GVRYGEPLHV RARPGPSRSL LRAEDDGALF YLCCAKADHG GSVVLSMIHI RPDDAPNKAD FTYEVKTPPA APGMQHRIQM QSTVWGTSLR
401: DGELYANPVS VKVPGSMLPR EEGPQQDSVE VRIVKVAPPP AGDSVSRS
101: RARSGSDRDE EEPDRHGRSP RRGPAAPRSC RSRSRTRSEE CEDRLCCRRS RSPGDDDDDG ERSVSPPPQE DFYLRIDRSD DLFKCAYCFE LLSSPVYECV
201: DGHVTCGVCH ESANEGDDGE AGDDRCIRCG STEYRRSRAV AGWLKSVLFP CGNHDYGCPA FLPRHKMEAH ERSCHYAPVF CPVDWRCDFP GGPTDALERH
301: VTAVHGWAVV GVRYGEPLHV RARPGPSRSL LRAEDDGALF YLCCAKADHG GSVVLSMIHI RPDDAPNKAD FTYEVKTPPA APGMQHRIQM QSTVWGTSLR
401: DGELYANPVS VKVPGSMLPR EEGPQQDSVE VRIVKVAPPP AGDSVSRS
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.