CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32010	Sorghum	extracellular	78.19	77.55
EES02573	Sorghum	cytosol	77.37	53.87
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	71.6	53.37
KXG32019	Sorghum	nucleus, plastid	75.72	49.46
OQU86439	Sorghum	cytosol, mitochondrion, plastid	40.74	37.22
KXG32085	Sorghum	nucleus	28.81	30.97
OQU86460	Sorghum	nucleus	32.1	23.35
KXG37942	Sorghum	cytosol, nucleus, plastid	23.87	21.8
KXG32028	Sorghum	plastid	30.04	21.73
KXG32008	Sorghum	cytosol, nucleus, plastid	23.46	21.43
EER97677	Sorghum	cytosol	26.34	21.19
EER92255	Sorghum	nucleus	25.93	20.86
KXG37941	Sorghum	cytosol	23.46	20.36
OQU84285	Sorghum	cytosol	25.51	19.94
EES02178	Sorghum	cytosol, nucleus, peroxisome	24.69	19.54
OQU78944	Sorghum	nucleus	24.69	18.4
KXG32009	Sorghum	nucleus	22.22	18.24
EES00387	Sorghum	nucleus	23.87	18.18
OQU77422	Sorghum	cytosol	21.4	18.18
OQU77414	Sorghum	mitochondrion, nucleus	25.93	17.8
OQU86453	Sorghum	cytosol	15.64	17.76
EES06707	Sorghum	nucleus	25.1	17.73
EES17731	Sorghum	nucleus	25.1	17.63
EES17728	Sorghum	cytosol, mitochondrion, nucleus	23.46	17.43
EES19270	Sorghum	cytosol, nucleus, peroxisome	25.1	17.28
KXG21322	Sorghum	nucleus	25.93	16.84
KXG32014	Sorghum	nucleus	14.81	16.36
OQU77425	Sorghum	nucleus	24.69	15.96
EES17735	Sorghum	mitochondrion	24.28	13.14
KXG19745	Sorghum	extracellular	4.53	11.46
EES02574	Sorghum	nucleus	18.93	10.27
KXG22272	Sorghum	cytosol	4.12	9.8
KXG30435	Sorghum	cytosol	4.12	9.8

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6Q260	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KXG32011	ProteinID:KXG32011	ProteinID:KXG32011.1	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF30	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G090200
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00081AC3A0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:7864311..7865159

Molecular Weight (calculated)

26716.4 Da

IEP (calculated)

7.372

GRAVY (calculated)

0.088

Length

243 amino acids

Sequence
(BLAST)

001: MDMDAFECPI CLSLFEGSIF QCKNGHAVCD ACRVRIHGTC PSCREPVVGD IRCRALENAI AGMVLPCSFS SHGCTQLLKH TERRHHEAFL CQHAPFACPL
101: HGCTYSGLLL YDHIQDAHTL CVDYDVRFIG SGWQVSLRRS TPFKVLLDPL DRRVFLLLNG RGIRSGRSLS VVCLGPRPPA NQLLEYKLEV GGDGEPGALS
201: LSASGSVTCM RSWAGQHPTD GFLFVPNACW DPMVCVIVNV RVQ

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.