CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32011	Sorghum	cytosol	77.55	78.19
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	72.65	54.6
EES02573	Sorghum	cytosol	74.29	52.15
KXG32019	Sorghum	nucleus, plastid	72.24	47.58
OQU86439	Sorghum	cytosol, mitochondrion, plastid	40.0	36.84
KXG32085	Sorghum	nucleus	27.76	30.09
OQU86460	Sorghum	nucleus	31.02	22.75
KXG32028	Sorghum	plastid	29.8	21.73
KXG32008	Sorghum	cytosol, nucleus, plastid	22.86	21.05
KXG37942	Sorghum	cytosol, nucleus, plastid	22.45	20.68
EER97677	Sorghum	cytosol	24.49	19.87
OQU84285	Sorghum	cytosol	24.9	19.61
EES02178	Sorghum	cytosol, nucleus, peroxisome	24.49	19.54
EER92255	Sorghum	nucleus	24.08	19.54
OQU77422	Sorghum	cytosol	22.45	19.23
OQU78944	Sorghum	nucleus	24.49	18.4
KXG37941	Sorghum	cytosol	20.82	18.21
KXG32009	Sorghum	nucleus	21.22	17.57
EES00387	Sorghum	nucleus	22.86	17.55
EES06707	Sorghum	nucleus	24.08	17.15
EES19270	Sorghum	cytosol, nucleus, peroxisome	24.49	17.0
EES17728	Sorghum	cytosol, mitochondrion, nucleus	22.45	16.82
OQU77414	Sorghum	mitochondrion, nucleus	24.08	16.67
KXG32014	Sorghum	nucleus	14.69	16.36
OQU86453	Sorghum	cytosol	14.29	16.36
EES17731	Sorghum	nucleus	22.86	16.18
KXG21322	Sorghum	nucleus	23.67	15.51
OQU77425	Sorghum	nucleus	23.27	15.16
EES17735	Sorghum	mitochondrion	23.67	12.92
EES02574	Sorghum	nucleus	17.96	9.82
KXG19745	Sorghum	extracellular	3.67	9.38
KXG30435	Sorghum	cytosol	3.67	8.82
KXG22272	Sorghum	cytosol	3.67	8.82

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6Q277	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KXG32010	ProteinID:KXG32010	ProteinID:KXG32010.1	PFAM:PF03145
PFAM:PF13920	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF30	InterPro:SINA-like
EnsemblPlantsGene:SORBI_3003G090100	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00081AE587	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:7856187..7857040

Molecular Weight (calculated)

26513.2 Da

IEP (calculated)

7.014

GRAVY (calculated)

0.278

Length

245 amino acids

Sequence
(BLAST)

001: MDLDAFECPI CLSLFQGSIF QCKNGHVVCD ACSVRIHGTC PSCREPVVGD IRCRALENAI AGMALPCAFS SHGCTRLLKH GERRHHEASL CLHAPFACPL
101: QGCAYSGQLL YDHIHDAHAF FLDCVVLCFA VAGSAWRVSL RRSTPFMVLL DAVDRRVFLL LNGGDVRSGR SLSVVCLGPR PMADQLLEYK LEVGGGAGGQ
201: PGVLSLSACS MPCMRSWAGQ QHTPDGFLFV PDAYWTSLDS VVIVN

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.