CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32011	Sorghum	cytosol	53.87	77.37
KXG32010	Sorghum	extracellular	52.15	74.29
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	51.86	55.52
KXG32019	Sorghum	nucleus, plastid	53.58	50.27
OQU86439	Sorghum	cytosol, mitochondrion, plastid	29.8	39.1
KXG32085	Sorghum	nucleus	18.62	28.76
KXG37942	Sorghum	cytosol, nucleus, plastid	16.91	22.18
KXG32008	Sorghum	cytosol, nucleus, plastid	16.91	22.18
OQU86460	Sorghum	nucleus	21.2	22.16
KXG37941	Sorghum	cytosol	16.91	21.07
KXG32009	Sorghum	nucleus	17.77	20.95
KXG32028	Sorghum	plastid	19.77	20.54
EER97677	Sorghum	cytosol	17.77	20.53
EER92255	Sorghum	nucleus	17.19	19.87
OQU84285	Sorghum	cytosol	17.48	19.61
EES02178	Sorghum	cytosol, nucleus, peroxisome	17.19	19.54
EES00387	Sorghum	nucleus	17.77	19.44
OQU78944	Sorghum	nucleus	18.05	19.33
OQU77414	Sorghum	mitochondrion, nucleus	19.2	18.93
OQU86453	Sorghum	cytosol	11.46	18.69
OQU77422	Sorghum	cytosol	15.19	18.53
EES06707	Sorghum	nucleus	18.05	18.31
EES17728	Sorghum	cytosol, mitochondrion, nucleus	16.62	17.74
KXG32014	Sorghum	nucleus	11.17	17.73
OQU77425	Sorghum	nucleus	18.62	17.29
KXG21322	Sorghum	nucleus	18.34	17.11
EES19270	Sorghum	cytosol, nucleus, peroxisome	17.19	17.0
EES17731	Sorghum	nucleus	16.62	16.76
EES17735	Sorghum	mitochondrion	18.34	14.25
KXG30435	Sorghum	cytosol	3.44	11.76
KXG22272	Sorghum	cytosol	3.44	11.76
KXG19745	Sorghum	extracellular	3.15	11.46
EES02574	Sorghum	nucleus	14.04	10.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:C5XE40	EnsemblPlants:EES02573	ProteinID:EES02573	ProteinID:EES02573.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF30
InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091200	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00081ACB79
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:7935187..7937524

Molecular Weight (calculated)

38901.3 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.034

Length

349 amino acids

Sequence
(BLAST)

001: MVKSKEKDRP ARKSMEELDA FECPICLSLF QGPIFQCKNG HVVCDACRVH IHGTCPSCRE PVVGDIRCRG LENAMASLAL ALPCSFRSHG CTELLMHTER
101: RHHEAFLCQH APSKCPFQGC PYSGLLLYDH IHDAHSCLDY EVRFGRSAWR GSLHRSRPFK VLLDPVDRRV FLLLNGGDIR SGRSLSVVCL GPRPAANQLL
201: EYKLKVCGAG KPGSLSLSAS GSVPCMRSWA GQYPTDEFLF VPDAYWTFFN SINANVHVQS STVNNALESK ACSNMCSSSP LVTRMAGRTS CHGRFPSYIL
301: GFRVRFAAFH LSIVSIVIAR LLRNWCLLKL WLVPGHVQAT YPAIYKLTR

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.