CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022401_P002	Maize	cytosol	98.68	98.68
Os07t0659800-01	Rice	cytosol	95.03	95.03
TraesCS2D01G131700.1	Wheat	cytosol	91.39	91.69
EER92255	Sorghum	nucleus	90.73	90.73
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	88.41	87.54
TraesCS2A01G129000.1	Wheat	plasma membrane	91.39	86.52
KRH13409	Soybean	cytosol	86.09	85.53
PGSC0003DMT400054414	Potato	cytosol	84.77	83.93
TraesCS2B01G151100.1	Wheat	plasma membrane	91.39	78.86
GSMUA_Achr3P08700_001	Banana	cytosol	88.41	77.39
KXG19745	Sorghum	extracellular	23.84	75.0
KRH20763	Soybean	nucleus	86.09	74.5
Solyc02g069880.2.1	Tomato	cytosol	49.34	73.76
HORVU2Hr1G022590.1	Barley	nucleus	90.73	72.3
EES02178	Sorghum	cytosol, nucleus, peroxisome	71.85	70.68
OQU84285	Sorghum	cytosol	66.23	64.31
EES06707	Sorghum	nucleus	72.19	63.37
EES19270	Sorghum	cytosol, nucleus, peroxisome	71.85	61.47
KXG22272	Sorghum	cytosol	20.53	60.78
KXG30435	Sorghum	cytosol	20.53	60.78
KXG32011	Sorghum	cytosol	21.19	26.34
KXG32010	Sorghum	extracellular	19.87	24.49
KXG32008	Sorghum	cytosol, nucleus, plastid	19.54	22.18
KXG37942	Sorghum	cytosol, nucleus, plastid	18.87	21.43
KXG32014	Sorghum	nucleus	15.56	21.36
KXG37941	Sorghum	cytosol	18.54	20.0
KXG32009	Sorghum	nucleus	19.21	19.59
OQU86439	Sorghum	cytosol, mitochondrion, plastid	17.22	19.55
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	20.2	18.71
EES00387	Sorghum	nucleus	19.21	18.18
OQU78944	Sorghum	nucleus	19.21	17.79
EES02573	Sorghum	cytosol	20.53	17.77
KXG32019	Sorghum	nucleus, plastid	21.85	17.74
OQU77422	Sorghum	cytosol	16.56	17.48
KXG32085	Sorghum	nucleus	12.58	16.81
EES17728	Sorghum	cytosol, mitochondrion, nucleus	17.88	16.51
OQU86460	Sorghum	nucleus	17.55	15.87
OQU77414	Sorghum	mitochondrion, nucleus	18.54	15.82
KXG32028	Sorghum	plastid	16.89	15.18
OQU86453	Sorghum	cytosol	10.6	14.95
KXG21322	Sorghum	nucleus	17.22	13.9
EES17731	Sorghum	nucleus	15.56	13.58
OQU77425	Sorghum	nucleus	16.23	13.03
EES17735	Sorghum	mitochondrion	15.89	10.69
EES02574	Sorghum	nucleus	15.23	10.27

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8073139	UniProt:C5X4R3
EnsemblPlants:EER97677	ProteinID:EER97677	ProteinID:EER97677.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3002G404300	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0001A834F9	RefSeq:XP_002461156.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:75423694..75427910

Molecular Weight (calculated)

34394.2 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.398

Length

302 amino acids

Sequence
(BLAST)

001: MASVTYIDDS LAEVIDPPKN EEMLDVTELV GDHIQHSPKP NVASYGNVRE LLECPVCLSA MYPPIHQCSN GHTLCSGCKP RVHNRCPTCR HELGNIRCLA
101: LEKVAASLEL PCKYQNFGCL GIYPYYCKLK HESQCQYRPY TCPYAGSECT VAGDIPYLVN HLKDDHKVDM HNGSTFNHRY VKSNPHEVEN ATWMLTVFSC
201: FGQYFCLHFE AFQLGMAPVY IAFLRFMGDD AEAKNYSYSL EVGGNGRKMT WQGVPRSIRD SHRKVRDSYD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQ

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.