Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G131700.1 | Wheat | cytosol | 78.89 | 99.34 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 80.21 | 95.3 |
| EER97677 | Sorghum | cytosol | 72.3 | 90.73 |
| Zm00001d022401_P002 | Maize | cytosol | 72.3 | 90.73 |
| Os07t0659800-01 | Rice | cytosol | 71.24 | 89.4 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 82.32 | 89.14 |
| VIT_13s0139g00150.t01 | Wine grape | cytosol, nucleus, plastid | 68.07 | 84.59 |
| KRH13409 | Soybean | cytosol | 66.49 | 82.89 |
| PGSC0003DMT400054414 | Potato | cytosol | 65.17 | 80.98 |
| GSMUA_Achr3P08700_001 | Banana | cytosol | 67.55 | 74.2 |
| KRH20763 | Soybean | nucleus | 67.55 | 73.35 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 55.15 | 72.82 |
| Solyc02g069880.2.1 | Tomato | cytosol | 38.79 | 72.77 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 55.41 | 64.22 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 50.4 | 61.41 |
| HORVU1Hr1G033130.2 | Barley | plastid | 56.73 | 53.35 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 9.23 | 38.46 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 15.83 | 21.82 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 15.83 | 21.05 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 16.36 | 20.67 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.04 | 20.36 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 13.98 | 20.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 12.93 | 19.44 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 15.3 | 19.33 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 10.55 | 19.23 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 16.62 | 18.98 |
| HORVU3Hr1G018420.2 | Barley | plastid | 15.57 | 18.61 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 16.62 | 18.58 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 13.19 | 17.86 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 14.78 | 15.64 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 13.46 | 15.45 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 13.72 | 15.25 |
| HORVU2Hr1G118840.1 | Barley | plastid | 13.46 | 13.75 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287HCF1 | EMBL:AK374206 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G022590 | EnsemblPlants:HORVU2Hr1G022590.1 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF37 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI000B480530 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287HCF1]
Coordinates
chrchr2H:+:65717956..65722010
Molecular Weight (calculated)
38743.4 Da
IEP (calculated)
7.052
GRAVY (calculated)
-0.270
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXNTPSPP YPSEGQTDQP ALPTTLFSAR PLRSPPPESQ GFCSIGLVMA SAAYLDDIDA EVIDPPKIEM
101: LDAAELVGDL IEHSPKPNVI VSSNVRELLE CPVCLVAMYP PIHQCSNGHT ICSGCKPRVH NRCPTCRSEL GNIRCLALEK VAASLEVPCK FQNFGCVGIY
201: PYYCKLKHES QCQYRPYTCP YAGSECTVTG DIPYLVNHLK DDHKVDMHSG STFNHRYVKS NPHEVENATW MLTVFSCFGQ YFCLHFEAFQ LGMAPVYIAF
301: LRFMGDDAEA KNYTYSLEVG GINRKMTWQG IPRSIRDSHR KVRDSYDGLI IQRNMALCFS GGDRKELKLR VTGRIWKEQ
101: LDAAELVGDL IEHSPKPNVI VSSNVRELLE CPVCLVAMYP PIHQCSNGHT ICSGCKPRVH NRCPTCRSEL GNIRCLALEK VAASLEVPCK FQNFGCVGIY
201: PYYCKLKHES QCQYRPYTCP YAGSECTVTG DIPYLVNHLK DDHKVDMHSG STFNHRYVKS NPHEVENATW MLTVFSCFGQ YFCLHFEAFQ LGMAPVYIAF
301: LRFMGDDAEA KNYTYSLEVG GINRKMTWQG IPRSIRDSHR KVRDSYDGLI IQRNMALCFS GGDRKELKLR VTGRIWKEQ
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.