Factsheet for TraesCS2D01G131700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G129000.1	Wheat	plasma membrane	100.0	94.36
EER97677	Sorghum	cytosol	91.69	91.39
Zm00001d022401_P002	Maize	cytosol	91.03	90.73
Os07t0659800-01	Rice	cytosol	90.37	90.07
TraesCS4D01G164700.1	Wheat	nucleus	87.71	87.71
TraesCS2B01G151100.1	Wheat	plasma membrane	100.0	86.0
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	86.05	84.92
KRH13409	Soybean	cytosol	84.05	83.22
PGSC0003DMT400054414	Potato	cytosol	82.06	80.98
HORVU2Hr1G022590.1	Barley	nucleus	99.34	78.89
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	65.45	78.17
GSMUA_Achr3P08700_001	Banana	cytosol	85.38	74.49
Solyc02g069880.2.1	Tomato	cytosol	48.84	72.77
KRH20763	Soybean	nucleus	84.05	72.49
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	70.1	64.92
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	70.43	62.17
TraesCS3D01G028800.1	Wheat	nucleus	16.94	23.83
TraesCS3D01G504900.1	Wheat	nucleus	19.93	21.9
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	19.93	21.74
TraesCS3D01G029000.1	Wheat	cytosol	20.27	21.63
TraesCS3D01G018100.1	Wheat	cytosol	18.94	21.27
TraesCS3D01G031300.1	Wheat	nucleus	18.27	20.07
TraesCS3D01G030300.1	Wheat	nucleus	19.6	19.73
TraesCS3D01G029600.1	Wheat	nucleus	20.93	18.81
TraesCS3D01G029300.1	Wheat	nucleus	20.93	18.53
TraesCS3D01G018300.1	Wheat	mitochondrion	19.6	18.27
TraesCS3D01G015600.1	Wheat	cytosol	17.94	18.18
TraesCS1D01G061700.1	Wheat	nucleus	20.93	17.9
TraesCS4D01G356400.2	Wheat	nucleus	18.94	16.96
TraesCS5D01G504400.1	Wheat	cytosol	10.96	16.42
TraesCS3D01G029400.1	Wheat	nucleus	22.26	14.6
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	13.29	14.04
TraesCS2D01G600200.1	Wheat	nucleus	16.94	13.97
TraesCS2D01G564800.1	Wheat	nucleus, plastid	17.28	13.87
TraesCS1D01G102900.1	Wheat	nucleus	16.94	13.35

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS2D01G131700	EnsemblPlants:TraesCS2D01G131700.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	:	:	:

Description

No Description!

Coordinates

chr2D:-:76761499..76763192

Molecular Weight (calculated)

34180.1 Da

IEP (calculated)

7.225

GRAVY (calculated)

-0.260

Length

301 amino acids

Sequence
(BLAST)

001: MASAAYLDDI DAEVIDPPKI EMLDVTELVG DLIEHSPKPN VIVSSNVREL LECPVCLVAM YPPIHQCSNG HTICSGCKPR VHNRCPTCRS ELGNIRCLAL
101: EKVAASLEVP CKFQNFGCVG IYPYYCKLKH ESQCQYRPYT CPYAGSECTV TGDIPYLVNH LKDDHKVDMH SGSTFNHRYV KSNPHEVENA TWMLTVFSCF
201: GQYFCLHFEA FQLGMAPVYI AFLRFMGDDA EAKNYTYSLE VGGINRKMTW QGIPRSIRDS HRKVRDSYDG LIIQRNMALC FSGGDRKELK LRVTGRIWKE
301: Q

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.